1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAGATAGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgcttttctgctctgttttttttttttgttggtggtctttttaactagagtctagagaaaatgctagcagcacactcttttgaacacaaattatgat...
species | Glycine max |
transcript | GLYMA06G03070.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|192294408|gb|FG987337.1|FG987337
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|193393205|gb|FK358441.1|FK358441
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTEST: gi|37994152|gb|CF805898.1|CF805898
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|151398032|gb|EV267910.1|EV267910
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGEST: gi|23735091|gb|BU765812.1|BU765812
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAG
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|58024109|gb|CX710850.1|CX710850
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|19345950|gb|BM890830.1|BM890830
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTEST: gi|192300028|gb|FG991846.1|FG991846
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAG-TEST: gi|8825687|gb|BE209480.1|BE209480
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
EST: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCA CAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
genomic: AGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgctttt ... tctttcgcagCAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGATAGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCAgtatgcttttctgctctgttttttttttttgttggtggtctttttaactagagtctagagaaaatgctagcagcacactcttttgaacacaaattatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg