Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtcattatatttctctgcttgttgtgaataggtaaaacctctgaattcttgacacaatgccttgcatttttaaatttgcag
Basic information
species | Glycine max |
transcript | GLYMA06G02120.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G02120.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G42430.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtc---attatatttctctgcttgttgtgaataggtaaaacctctgaattcttgacac----aatgccttgca-tttttaaatttgcag----------------
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GTGTGGAGAAATCTGGTAAAAATTCTGAGGGTGACTCTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGgtctatgttataacattccctttaccagatatagcttcgttgccaacagttttcgcgctgctagattcttacagtcctctcattgtcaacttgatcaaatttcag
upper sequence: GLYMA06G02120.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g02700.t01 (Vitis vinifera), 5'ss of exon 2
GTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtcat-tatatttctctgcttgttgtgaataggtaaaacctctgaattctt--gacacaatgccttgcattt-ttaaatttgcag-----------------------------------------------------------------
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GTGTGGAGAAATCTAGAAGGAATGCTGAAGAGGAATCATGGTTGGGAACATGGCAAGAAGTTCTTCATCAAGATGAATGGAGgtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaattttaaatttgtag
upper sequence: GLYMA06G02120.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19379 (Selaginella moellendorffii), 5'ss of exon 3
GTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtcattatatttctctgcttgttgtgaat-aggtaaaacctctgaattcttgacacaatgccttgcatttttaaatttgcag------------------------------------------------------------------------------------------------------
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GTGCTGAAAAGTCCGGCAAAAATGCTGAAGGCGATGCCTGGTGGGAAACCTGGCAGGAAATTCTGCGTCAAGATGAATTGAGgtgaggagatat-taagactgttgaaatccattttatgtgttttcttgcgcagtaacctggctcgaatcgaaaggacggcacagaaacaagcgaagcaagggaatggggaggccggatggtacgagaaatggtaagaacacgtcgtatgatcaagcttaatatcacatcgtagttttggaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409651|gb|EV279459.1|EV279459EST: GATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAG TAACATAGCAAGAATAGAAAGAAGTGCACAAAAACAAGCAAAATCAGGAAC
genomic: GATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtcattatat ... aaatttgcagTAACATAGCAAGAATAGAAAGAAGTGCACAAAAACAAGCAAAATCAGGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGGAGAAATCTGGTAGAAATTCTGAGGGGGATACTTGGTGGGAAACATGGCAGGAAAATCTTCATCAAGATGAATGGAGgtcattatatttctctgcttgttgtgaataggtaaaacctctgaattcttgacacaatgccttgcatttttaaatttgcag
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG