Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAGgtgtgttgtcttgttccctgtgtaattgtttgctattttcttttggaatgctagttttgtcagttattgcaaattcaaatgatgatatcctatagtcagaatggaccaatgattcttttattaataatacag

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 6
GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAGAAGATTGATGGTGACAATTACCCTGAGgtgtgttgtcttgttccctgtgtaattgtttgctattttcttttggaatgctagttttgtcagttattgcaaattcaaatgatgatatcctatagtcagaatggaccaatgattcttttattaataatacag
||  |||||||| | |||||| |||| ||||| |||||||  ||  |||||||||||||||| || |||||||||||||| |     ||| |||          ||||  |          ||  | ||||   |||| |   ||| |||| |  |   | |  |    |||       |||| |    | ||| |||  | |  | |||
GGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacctttttc----------tgttgaca---------tgataagctatagttgtaatccatttcaaaattgatataggtgactgaatatgtgccctggatcttgaactctctta--actgctgcag