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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag

Basic information

species Glycine max
transcript GLYMA06G01120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g36870.1 (Oryza sativa), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
 ||||| || || || || ||||||||||||||||| ||||| ||||| || |||||||| ||| | || ||||| ||||| |||||||||||||| |||||           |||||  |  |  |   |||| | |||  ||    |||         || |||   | |||     ||| |  |||||  |   |   | |||  ||||| ||  |                               
GGCAGAACCGTTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACAGGATGCGTCAGGAAGCCGAAGCACAGgt-----------tatctcactatgaaacatactgtctttactacccttcat--------atgttgcctattgttatggtgattt-ctattaaacatactgtctttaccctttttatctg------------------------------

upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G002859_T02 (Zea mays), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactat-ttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
|||||| ||  | || || ||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||||||| || ||||| ||||| |||||   |  |    ||| | | |   ||||| | |  |   ||||  | | |||   ||   |||  |    | | | ||  ||     || |||||      ||||                                             
TGCAGAACCTCTGAGGGCTATGGTTATGGGAGCTCCTTTGGAGGATGCTCGCCACCTTGCTCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttca---ctatgtattacactattgca-taatgagtttacct-ttacct-tttgtctttgtatctctttattaacaagggggcatattcattgtcactttt---------------------------------------------

upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G123624_T01 (Zea mays), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgt-atctggaattttatctt-tcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
|||||| ||  | ||||| ||||| ||||||||||| |||||||||||||| || || || ||| | || ||||||||||| || ||||| ||||| ||||| || | ||  | ||| |    |||  ||  ||  |||   ||||  | |       ||  || |       | | | ||  ||  |   | ||     | | ||||                                            
TGCAGAACCACTGAGAGCTATGGTTATGGGAGCTCCTTTGGAGGATGCCCGCCACCTCGCCCAAAGGTACGACAGAATGCGTCAAGAAGCTGAAGCGCAGgtgatttcgatatgtatttcactattgcataataagtttacatttaccttttgtt---ttgtatctc------tttatcaacaagagatggtatccattgtcacttttg-------------------------------------------

upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
||| ||||| ||| | ||||||||  ||||||||||||||||||||||  | |||||||||||||| |||||||||||||| || ||||| ||||| ||||||    |||   ||      ||   ||    || |||  ||     || |  ||  ||    ||      | |   ||  | ||   |||| || |     ||       | | |||||    |||  |      || || | | ||||
TGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTAGACATCTTGCTCAACGCTATGACAGAATGCGCCAAGAAGCTGAAGCTCAGgtacggtgaaagata------ataccatgaagctatttaatt--accgttagtagaatatgggttttttcctcttccaagaactagtcattttatta-----ttcgcatgatagaactttac--ttatgcgcctgctttaatccaaacag

upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattttgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
||||||||| |||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| || ||||| ||||| |||||||    ||       ||| ||||  || | |   | | |  | || || ||    ||   ||||||  || | |||   | |   | ||| ||   ||| |||||   |                                       
TGCAGAGCCATTAAGAGCGATGGTAATGGGAGCTCCATTGGAGGATGCTCGACATCTTGCTCAACGCTATGAAAGAATGCGACAAGAAGCTGAAGCTCAGgtattcttaaacaa---ttttatttagtttttcaaatgtatgcacttttctcc----tagggtttgagtcatatttgat--att--ttcttttattgctgagtttttgttt---------------------------------------

upper sequence: GLYMA06G01120.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 5
TGCAGAGCCCTTAAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaattttatctttcattttattgtacttttttttttatttgtcaccagcttacattt-tgagaaatgtctgaatgagtaactatttcatcaatgatttttttcctttgtactttgtaattacactgtcttttaaacctagacag
|| ||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||   |||||| ||||| |||||| |   |    |||    |||||  || || | |    | |  | |   | | ||| ||||| | |  ||  | |||  || |    |||||||   | || ||                                             
TGGAGAACCCTTAAGAGCAATGGTAATGGGAGCTCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGAGAGAATGCGAATGGAAGCTGAAGCTCAGgtaacgttaga--tatgagacatttctttata-tctgcagtctgctggatgc-atcttccatttcttaccaaaatttgagcgatt---catttcattg-tcatattcc-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400692|gb|EV270506.1|EV270506
EST:     GGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAG                         GCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT
genomic: GGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaa ... acctagacagGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT
EST: gi|151405314|gb|EV275128.1|EV275128
EST:     GGCATCTTGCTCAACGTTATGACGGAATGCGGCAGGAAGCCGAAGCCCAG                         GCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT
genomic: GGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaa ... acctagacagGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT
EST: gi|151395558|gb|EV265435.1|EV265435
EST:     GGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCGG                         GCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT
genomic: GGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCCCAGgtatctggaa ... acctagacagGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAAT