Sequence
atgc intronic sequence ATGC exonic sequenceGGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcacttcagtttgccttgcttctttttttttggcaattgcatctggaactgtaacatcattttcattgaatgttttgtctattatatct...
Basic information
species | Glycine max |
transcript | GLYMA06G00300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G00300.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G38360.2 (Arabidopsis thaliana), 5'ss of exon 6
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcact-tcagtttgccttgc------tt---ctttttttttggcaattgcatctggaactgtaacatcattttcattgaatgttttgtctattatatct--------------------------------------------------------------------
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TGCCATTGCTCTCCTCTCTTCCCTCGGCTTGTTCAAAAGTTCAATTGCACAAAGCTTGCAGTTGAAGACTAGCGTGCAAGATTTCATCATTTGCATAGAGgtaaatgtcttctgttgttaccaattcctgcaaaaggttaaacattatgtgtgatctttgtttacgagtgcaaaactttttcttcattgcttcctattaacaagcagtctatggagtcgtctgttttcctttctttaaataaattaaagctcttaacacttgtgctggtccagtgcag
upper sequence: GLYMA06G00300.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G38360.1 (Arabidopsis thaliana), 5'ss of exon 6
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcact-tcagtttgccttgc------tt---ctttttttttggcaattgcatctggaactgtaacatcattttcattgaatgttttgtctattatatct---------------------------------------------------------------
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TGCCATTGCTCTCCTCTCTTCCCTCGGCTTGTTCAAAAGTTCAATTGCACAAAGCTTGCAGTTGAAGACTAGCGTGCAAGATTTCATCATTTGCATAGAGgtaaatgtcttctgttgttaccaattcctgcaaaaggttaaacattatgtgtgatctttgtttacgagtgcaaaactttttcttcattgcttcctattaacaagcagtctatggagtcgtctgttttcctttctttaaataaattaaagctcttaacacttgtgctggtccag
upper sequence: GLYMA06G00300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g03670.t01 (Vitis vinifera), 5'ss of exon 7
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcacttcagtttgccttgcttcttttttt-ttggcaattgcatctg-gaactgtaacatcattttcattgaatgttttgtctattatatct--
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GGCGATTGCTCTTCTTTATGACCTTGGTTTATTTAAGAGTGCTATTGCTCAAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgta---gtttttctctttggctggatctggtttttctttcgctgatgcatgattgtatgtattatatcagcacattggttga-tattccttgaatttttattacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24135831|gb|BU926341.1|BU926341EST: AAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAG ATGGGCATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCAAAGCCTTAT
genomic: AAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtcc ... tcaagcacagATGGGCATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCAAAGCCTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcacttcagtttgccttgcttctttttttttggcaattgcatctggaactgtaacatcattttcattgaatgttttgtctattatatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcac