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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaattcagtttgcctgcattagctttggcatttacttgtttgggttctaggtcagactcttatcctgaacacaatctggt...

Basic information

species Glycine max
transcript GLYMA05G37870.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 4
-AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaattcagtttgcctgcattagctttggcatt----tacttgtttgggttctaggtcagactcttatcctgaacacaatctggt-
 || ||   || | ||||||| ||||| || |||||||| || || || |||||||||||||| ||||||||||| ||  |  | |||||| | ||||||||| |||   |  |  ||| ||  |   |  |||||     | ||||    ||    |  |    |   ||        |  |||  || ||   ||| |   |  
AAGGTTAGCAA-TTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATGCCCAATGACACACTAGCGAAGCATCTTTTCCATTgtgagt---tgccatgcatttcttgtcgcatgccttag--aacttttatgttgctgtcatcacatcaattagtaactgggttctgttcatggttacatttccgca

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G055561_T01 (Zea mays), 5'ss of exon 5
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaat-tcagtt-tgcct-gcatt--agctttggcatttac--ttgtttgggttctaggtcagac-tcttatcctgaac--acaatctggt----
                        || || |||||||| |||||||| |||||||||||||| ||||||||||||||  |  | || ||| | ||||| ||| ||| | |    | || |  || | |||| ||  | |||||  |   ||| |    ||  |  || ||| |       ||||  || || || | |    || |        
------------------------TGCTGCGAAGGTGATGAAAGGTTGCTTGTTGCAGAATACATGCCCAATGATACGCTCGCGAAACATCTTTTCCACTGTGAGTCCTTTGAAAACATTCTATgttagttatgtttagcattacaaaattgtcggggaccataattaggggtaccctcaagacgcctaattctcagctggtaacccccatcag

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 4
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaattcagtttgcc--tgcattagctttggcatttacttgtttgggttctaggtcagactcttatcctgaacacaatctggt
|| |||  |||| ||||||| ||||| |||||||| || || || || |||||||||||||| ||||||||||||||  |  | |||||  | ||||||||| ||| | |    | ||  || ||  ||||  |  | ||  |   || ||||| |     |   | |  |   ||     |||      |  | ||    |
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGCGATGAGAGATTGCTTGTTGCAGAATACATGCCCAATGATACGCTAGCGAAGCACCTTTTCCATTgtgagttctttgaaaaca--tagttatgtttagcattacaaaacaatttgcattcataatctgttgcttgactacaaggaattaaggatgatgccatgacat

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 3
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcat-aactagcaatt--aattcagtttgcctgcattagctttggcatttacttgtttgggttctaggtcagactcttatcctgaacacaatctggt
||| ||  |||||| ||||||||||||| |||||||||||| ||  | |||||||| || | |||||| ||||| |||||| | |||||| | ||||||||||||| | | ||||     ||  || | | |||  ||  ||   || |     |   | |||  | ||||     | ||| || |  ||       | | | 
AGAATGGCAAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATCTTTTCCATTgtaagttcttgaacttattgttgtaacttactttatcta-atacactcttcttctctatggttatgattctgtagta-actgttgttttgttt---ttttag-

upper sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 5
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcataactagcaattaattcagtttgcctgcattagctttggcatttacttgtt-tgggttctaggtcagactcttatcctgaacacaatctggt
||||||  |||| ||||||| ||||||| |||||| || || ||||||||||| ||||||| |||||||||||| ||  |  |||||||  | || ||||||||||   | |          ||   ||   | |||||  ||||| ||||||        |   || ||  | |||    |||  |    | | ||    
AGATTGGCAAATTTGCTTGGTTGTTGTTCTGAAGGAGATGAGAGGTTACTTGTCGCAGAATTTATGCCCAATGACACACTTGCAAAGCACCTGTTTCATTgtaagtttcttagacatgcaacatctggtgaccttgcatatgctttagcatttgtgcaacatttattttatttaagaaatctatatttgggatactcaat-