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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagttttttctctcttctcatctttcaagttcttgaactgctgaacacttactgatgtctcagcttgaaaatcttgctcatatgtcactttctgactgc...

Basic information

species Glycine max
transcript GLYMA05G37850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 5'ss of exon 5
GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagttttttctct----cttctcatctttcaagttct---tgaactgctgaacacttactgatgt--ctcagcttgaaaatcttgctcatatgtcactttctgactgc------------------
|| ||||| ||||  ||||||||||| ||||||||| | || |||||||| ||||||||||||| | | |  |||||||| |||||||| |||||||||||  |  |    ||| | |   || |  || |   |||| |      | | |||  || |  || | |||  ||     | || |||   | |||    || |                  
GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAGgtagttttggccttagaccttgtaaagctttagtttttgtatgaattcagtgtcgcgtacatatttaacttaacttacaagaagggttcctataa-attttaatgcttcagttttttttctttatag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 5'ss of exon 5
GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagttttttctct----cttctcatctttcaagttct---tgaactgctgaacacttactgatgt--ctcagctt----gaaaatcttgctcatatgtcact--ttctgactgc----------
|| ||||| ||||  ||||||||||| ||||||||| | || |||||||| ||||||||||||| | | |  |||||||| |||||||| |||||||||||  |  |    ||| | |   || |  || |   |||| |        | |||  || |  || | |||    |||    |     | || | | |  ||| || ||           
GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAGgtagttttggccttagaccttgtaaagctttagcttttctatgaattcagtgttgcctacatatttaacttaacttacgagaagggttcctataaattttaatgcttcagattgtttctttatag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G111579_T01 (Zea mays), 5'ss of exon 4
GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagttttttctctcttctcatctttca-agttcttgaactgctg-aacacttactgatgtctcagcttgaaaatcttgctcatatgtcactttctgactgc---
|||||||| ||||  |||||||||||||| |||||| | ||| |||| || |||||||| |||| | | |  |||||||| ||||||||||||||| ||    || || | | | |||  | |      || ||| || |    | |    ||||||| |||    | |  | |   | ||      | | ||     
GTTAAAGCAGTTGGAGAGGAAATGGGAATAGGATTTCTTGGGCTTGGCTTTCAGCCAAAATGGGCACTGAGTGACATACCAATAATGCCAAAGgtaatt----ctgtcctttaaccttggagaagagcagacctggtgcagtgttgagaactgtctca-cttagtcaccaggttggcaggttcgaagcagcctctccg

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 5
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 5'ss of exon 5
GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgta--gttttttctctcttctcatctttcaagttcttgaactgctgaacacttactgatgtctcagcttgaaaatcttgctcatatgtcactttctgactgc-----------------------------------------------------------------------------
|| ||||| ||||||||||||||||||||||| || || || ||||| |||||||| || ||| |     | || ||||| || ||||||||||||      ||||||| |||| |   || |||    | |||  |||     ||     |     |   | |     ||   ||||    || ||| || |                                                                               
GTAAAAGCAGTTGCTGAGGAAATGGGAATTGGTTTCTTAGGAATTGGCTTCCAGCCCAAATGGCGTCGGGAGGATATACCCATCATGCCAAAGgtatgacgctttctctattcttaagattgaagaaagttaacatctgtttgtttctaattcagataatattatctgattctacatagccaacgttcggattatttcttggtgtttgtgttaagttttcctatgacgagtcaggcagtaagatttgacatagtgtaatgtgttctgtgcag

upper sequence: GLYMA05G37850.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 5
GTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagttttttctctcttctcatctttcaagttcttgaactgctgaacacttactgatgtct--cagcttgaaaatcttgctcatatgtcactttctgactgc
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||| || ||||  || ||||| |||||||||||||| |||||| |   |  ||   | ||     |||     ||| | |    || ||  |    || |     | || |||| |  |     ||| |  |||  | ||| 
GTTAAAGCAGTTGCAGAGGAAATGGGGATTGGATTCTTAGGTATTGGTTTCCAGCCCAAATGGGCTATTAAAGATATACCTATAATGCCCAAGgtattacctattcctctatctatgatcagtgaattgga-tatgcaataccaaaacgtggcaggtggtttaaaaaacaagtggggatggc-ttttgagcctgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348212|gb|BM892744.1|BM892744
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|120496239|gb|EH224406.1|EH224406
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|9204205|gb|BE330429.1|BE330429
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG