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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcatagcaattgttttattctgtgactctatcctttttgttaaatatttgccgctgaatttttactgtgactttcatattgtttcca...

Basic information

species Glycine max
transcript GLYMA05G37160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaat--attttgtgca----tagcaattgttttattctgt-gactctatcctttttgttaaatat-ttgccgctgaatttttactgtgactttcatattgtttcca
|||||| || || ||| |||||||||| |||||||||||||||||||| || || ||||||||  | || || || || ||||| || ||  | || |||||   |   ||| |  |     ||  | |  |||| |||     | || |   |||     |  |||        |  | |   |||   || || | |         
CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgtttagctcgattttaatattcattttgttccaccaattccaaagtttcaaccatgtatacaagtagttcagtaccactagaacatttaaac--------

upper sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcatagcaattgttt----tattctgtgactctatcctttttgttaaatatttgccgctgaatttttactgtgactttcatattgtttcca
|||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||| ||||| ||| |||| || || || ||||| || ||  | |||||||||     ||||  |||  || ||  |     ||   |||  | | |  |  |||       |  |   |   |  |     | |   ||| | |      || 
CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtac---ctttggccatctcattttctcaatataccatgtcgcaccaaacgcttttgagttcacatcatgtccagctgcctttttttttttgaaagaaaaacc-

upper sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcatagcaattgtttta---------ttctgtgactctatcctttttgttaaatatttgccgctgaatttttactgtgactttcatattgtttcca-----------------------------------------------
  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||||||||  |  | || || |  ||||| || || ||||||||||| ||  |    | |  |     | | |||         | |  ||   |||  ||| |   |   |||| |   |  || | ||       | ||  | ||||    |                                               
TGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAGgttaaattaaaatccccatttgctctcttaaatttgtagtaccatgttcctaagcttataccttcttattggtttcaaaactcttgaaacctcatttgtcttgtcctaagtatttttagttttgttctaaaggatcttttcttgaaatgtgtgtag

upper sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcatagcaattgttttattctgtgactctatcctttttgttaaatatttgccgctgaatttttactgtgactttcatattgtttcca--
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| || | ||||| || ||||||||||| ||||||||||||  |  | |   || ||    | |||| ||       |   |  ||| | |     | ||  |  | ||||     | | |  || || || ||| |   
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctctt--caaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471733|gb|CD413761.1|CD413761
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctcattgcagATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
EST: gi|37997101|gb|CF808690.1|CF808690
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctcattgcagATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
EST: gi|14991231|gb|BI316904.1|BI316904
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctcattgcagATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
EST: gi|193578548|gb|FK534800.1|FK534800
EST:     CTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT
genomic: CTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctcattgcagATCCGAAGGCAGCTCTTTGGATAAGTTGTTGCTTGAATATTTTGATTGTAT