Sequence
atgc intronic sequence ATGC exonic sequenceCCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAAGATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccattgattctttatcttataaacaattagtgaaaaagtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcag
Basic information
species | Glycine max |
transcript | GLYMA05G36930.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAAGATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccattgattctttatcttataaacaattagtgaaaaagtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcag
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CCTCGGCAAGAATGGCGACTCAATGGGTGGTACGGGCTGGTCGATGACCGAATTTGGTTGGGACGTTAAGTATGCTGGTGTTCAAACCCTTGTGGCCAAGgttaattcatttacatttaagagttttctcggtttg-----atgtggtttac-----ttgatttggttttactaaaaatgtataaaccgataattttggttggttaatag---------------------------
upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAAGATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccattgattctttatcttataaacaattagtgaaaaa-gtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcag
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CTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgt--tagtattagtagcgtaacc------caatttttgaattttgtggttaaccggttttgacaatcttggtttg---atactaaaccggttattttgt-ttctttctttgacag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193465496|gb|FK431561.1|FK431561EST: AATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAG TTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCC
genomic: AATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccat ... ttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAAGATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccattgattctttatcttataaacaattagtgaaaaagtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcag
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