1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtactacagtctgtaatctaacttctcattacttgtccagaaatcctaaatattatttatgcaagtagattgccacgcattacactttctcattgttgtgtggctctctggatccag
species | Glycine max |
transcript | GLYMA05G36600.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAGTGGCAAGGAACCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCTTG-ATGTGGCTCCCCTCACCCTTGGAATTGAAACTGEST: gi|192328339|gb|FK020050.1|FK020050
genomic: GCAGTG-CAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtactacagt ... ctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCGAAG ATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGEST: gi|254344089|gb|GR850999.1|GR850999
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtactacagt ... ctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTG
EST: GTGAAGAAACCAAAG ATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTGEST: gi|48575122|gb|CO036245.1|CO036245
genomic: GTGAAGAAACCAAAGgtactacagt ... ctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTG
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtactacagt ... ctggatccagATATCCTTCTCTTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtactacagtctgtaatctaacttctcattacttgtccagaaatcctaaatattatttatgcaagtagattgccacgcattacactttctcattgttgtgtggctctctggatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA