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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTAgtacgtctcattcttcaatttcaaaaatggactaatgagtgttcacataatggtttcatatgctgtttagagcaattacttacttctgtttaaagattgcttatctatgaagccatatgttcataactatgcttttaggtatgttttataatatgaaatgtcttaattaattttag

Basic information

species Glycine max
transcript GLYMA05G36280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 5
TGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTAgtacgtctcattc-ttcaatttcaaaaatggactaatgagtgttcacataatggtttcatatgctgtttagagcaattacttacttctgtttaaagattgcttatctatgaagccatatgttcataactatgcttttaggtatgttttataatatgaaatgtcttaattaattttag
 || |||||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||  |||| |||||||| ||  | |||||| ||  |  |  | |  | |||       ||||     ||||  | | ||  ||  ||   || |    |    ||  ||  ||   || || || |||||                                                                          
AGGATTGAGATATCTTCATGAAGAATGCAGAGTGGGTTGTATTGTCCACCGCGATATGCGGCCTAACAATATCCTCATCACGCATGATTTTGAACCATTAgtatgttactcttatcctgtctcat-----tactataagctgttttctttatcattctattgcctctcctaatatttttattttttactttcaaggaatgcttta------------------------------------------------------------------------

upper sequence: GLYMA05G36280.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ20033 (Selaginella moellendorffii), 5'ss of exon 14
TGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTAgtacgtctcattcttcaatttcaaaaatggactaatgagtgttca-cataatggtttcatatgctgtttagagcaattacttacttctgtttaaagattgcttatctatgaagccatatgttcataactatgcttttaggtatgttttataatatgaaatgtcttaattaattttag
 |  ||||| ||| | |||||||| ||  ||||||| |||||||| || ||||||||||| |||||||| |||||  | ||||| || |||||| |  | ||| || || |  || |||||| |   | ||   ||||  || |  |  | | || | |    | | |  |||  |||    ||||       ||||| ||    | ||| |                                                                 
AGCTTTGAGGTACTTACATGAAGAGTGCCGAGTGGGGTGTATTGTTCATCGTGACATGCGACCAAACAACATTCTGTTAACTCACGACTTCGAGCCAATGgtaagt-tcttgttttaatttcta--ttcgat--atgatagtccggctcacttgtctgagcatcaggtgggag--attttggacttgc-----aagatggcaacccaatgga-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252447|gb|BG363358.1|BG363358
EST:     GTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTA                         GTAGGAGATTTTGGACTAGCAAGGTGGCA
genomic: GTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTAgtacgtctca ... ttaattttagGTAGGAGATTTTGGACTAGCAAGGTGGCA