Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGCTGTGATTCTTGGTACTGGGACAAATGCAGCATATGTAGAACGTGCACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggttatgaatgcgtgtgagatttagtttcttgtgtgatagatttgtccttattgtgtgtgatacaaagcatgctgattacttctaagtattatag
Basic information
species | Glycine max |
transcript | GLYMA05G35890.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G35890.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g45590.1 (Oryza sativa), 5'ss of exon 5
TGCTGCTGTGATTCTTGGTACTGGGACAAATGCAGCATATGTAGAACGTGCACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggttatgaatgcgtgtgagatttagtttcttgtgtgatagatttgtccttattgtgtgtgatacaaagcatgctgattacttctaagtattatag
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TGCTGCTGTTATACTGGGAACAGGTACTAATGCAGCATACGTGGAACGTGCCAATGCAATTCCTAAATGGCATGACCTCCTGCCGAAGTCAGGAGATATGgtgagt-gcttttgcttctacctagcttattggtgatgaggcattactcat-tagataatagatatgttgcgaaaaatcatgaaatctgtttataatatctg
upper sequence: GLYMA05G35890.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 4
TGCTGCTGTGATTCTTGGTACTGGGACAAATGCAGCATATGTAGAACGTGCACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggttatgaatgcgtgtgagatttagtttcttgtgtgatagattt--gtccttattgtgtgtgatacaaagcatgctgattacttctaagtattatag
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TGTCGCAGTTATTTTGGGCACCGGCACAAATGCAGCCTATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTACCCAAATCAGGAGAAATGgt-------ttgtgttttcgaataaaacataacaactccaattgagctttcaagtacctgtttcatcttatagtatgtatg-----taccacaatgtag-----
upper sequence: GLYMA05G35890.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03070.t01 (Vitis vinifera), 5'ss of exon 5
TGCTGCTGTGATTCTTGGTACTGGGACAAATGCAGCATATGTAGAACGTGCACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggttatgaatgcgtgtgagatttagtttcttg--tgtgatagatttgtccttattgtgtgtgatacaaagcatgctgattacttctaagtattatag------------------------------------------------------------------------------------------------
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TGCTGCAGTGATCTTGGGTACTGGAACAAATGCAGCCTATGTAGAACGGGCACAGTCAATTCCCAAGTGGCATGGTCTCCTACCGAAATCTGGAGATATGgttagcagttctcttataatttccatctattgatatgtgattaggaatgtactatccatcttctattaaaaacaaaaaatcttgacttttttttaatgtctctttcctgatatagaaatgtttctgtggtttggaacctagtatacaagttatgctattatgtcggaagataaataattttcttaataaaatttctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208158099|gb|GD955612.1|GD955612EST: CACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATG GTTATAAACATGGAGTGGGGTAATTTCCGATCATCACATCTTCCTCTAACA
genomic: CACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggt ... agtattatagGTTATAAACATGGAGTGGGGTAATTTCCGATCATCACATCTTCCTCTAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGCTGTGATTCTTGGTACTGGGACAAATGCAGCATATGTAGAACGTGCACATGCTATTCCAAAATGGCATGGCCTTATACCAAAATCAGGAGATATGgtaagtaggttatgaatgcgtgtgagatttagtttcttgtgtgatagatttgtccttattgtgtgtgatacaaagcatgctgattacttctaagtattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT