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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtacttctcttttttaaaattaatacaaaatttgtagttcgctattgcttttataagactagctaatgtggatttgagggttgttaaaacaccaatgatt...

Basic information

species Glycine max
transcript GLYMA05G35260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 7
AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtac---ttctcttttttaaaattaatacaaaatttgtagttcg---ctattgcttt-tataagactagctaatgtggatttgagggttgttaaaacaccaatgatt
|||||| ||||||| |||||||||||||||||||| ||||| || ||||| || |||||| | ||||| || || |||||||| |||||||| |||||||    || | || ||||| | |  |  |   ||||  | | |   || ||  ||  | | | |  |     | || || ||     | | | |   |||      
AGAACTCTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTTCCAGATGTTGGATTTGCTTACATAGCAGCACAGAGTCCAGGAGAAGGATCAGTTGgtatgctttttgttatttaagagttttg-atggtttgaggatggaaccttttatttagtttcacatcaaagtttttgtatctgctatctatcataggtcca------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207773587|gb|GD745705.1|GD745705
EST:     TGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG                         GTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCTTCAGATGCAA
genomic: TGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtacttctct ... ctaattgcagGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCTTCAGATGCAA