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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGgtatttagatcttttcacctcttgcatgagattattaatttgcagcttttgttgctcaagattatgatcatgaaatttatccaatatatttcaaaccatt...

Basic information

species Glycine max
transcript GLYMA05G34820.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34820.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGgtatttagatcttttcacctcttgcatgagattattaatttgcagcttttgttgctcaagattatgatcatgaaatttatccaatatatttcaaaccatt----------------
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ATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAGgtgccaata-cttttttcatccta-atgtatttcccaacaaagaa-ttaagtttccctgaagtataagcttatatcatagtttataggtctgattctatctaattttctttcgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276695|gb|BI941986.1|BI941986
EST:     GATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG                         CCAGGAACATTCTATGCCTTGCCACAAAGTCCTCAGCTATTTAAGCAAATG
genomic: GATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGgtatttagat ... aattatgaagCCAGGAACATTCTATGCCTTGCCACAAAGTCCTCAGCTATTTAAGCAAATG