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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttgtcatggttgaactgttttttattttgcttacttttattccaggcgaatatatatcttgagttttcaaattctaacatcagtttaatttgcag

Basic information

species Glycine max
transcript GLYMA05G34630.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 5
TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttgtcatggttgaactgttttttattttgcttacttt-tattccaggcgaatatatatcttgagt------tttcaaattctaacat-cagtttaatt-tgcag
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TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctttta--gttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322766|gb|FK014457.1|FK014457
EST:     TTATCATGCCTCCATCAGCCCTTGACCGTCTAG                         CATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG
genomic: TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttg ... taatttgcagCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTG