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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtgttcttgagaaaatatgtagtgttccatttgactactgttgtttcttggttggtaatattatgatgcttggttactgtag

Basic information

species Glycine max
transcript GLYMA05G34280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 5
TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtgttcttgagaaaatatgtagtgttccatttgactac---tgttgtttcttggttggtaatattatgatgcttggttactgtag------
|||||||||||| || || || |||||||| |||| ||||||| ||||||| |||  |||||| || || |||||||||||||||||||||||||||||||| |||||| |      | || |   |  |||    ||  | | |   ||| |||   || |   | ||||| || |  | | ||||   |       
TTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGgtcagttgtttctgaatgcaactccatgctgtctttttgtaatgcagctgtggttatatgttattttatattttggta-tggtttacaaaatttgcag

upper sequence: GLYMA05G34280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0017g02160.t01 (Vitis vinifera), 5'ss of exon 5
TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgt--gtt-cttgagaaaatatgtagtgttccatttgactactgttgtttcttggttggtaatattatgatgcttggttactgtag------
 || ||||| || || ||  | || |||||||||||||| |     ||||| || |  || || |||||| | || |||||||||||||| ||||||||||| ||||||  ||| | |      || | |  ||  | || |      || |||   ||||||    | | | | |    || ||    ||       
ATCGATTGGACCCCCACCGATGATAGCAAACAAAGCTCCGGTAATCCAGCCAGCAAGTAATGAGGTCTACCTTGTATGGGATGATGAGGCGATGTCCATGgttagttgttagttacctttctggatgtatcatgc-caatcttttggatgctgtactttggtttaacacactttaaattgtgtttgaaatatctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326254|gb|GR840846.1|GR840846
EST:     CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
EST: gi|6095024|gb|AW119691.1|AW119691
EST:     CTGCCACCAACGAAGTCTACTTGGTTTGNGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTC
genomic: CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtg ... gttactgtagGAGGAAAGAAGAATGTC
EST: gi|6846393|gb|AW348683.1|AW348683
EST:     CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
EST: gi|7042083|gb|AW471977.1|AW471977
EST:     CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGgtgagttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC