Sequence
atgc intronic sequence ATGC exonic sequenceGCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt...
Basic information
species | Glycine max |
transcript | GLYMA05G33980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 5
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagtttt-ctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt-
||| || || |||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| | ||||| |||||| | | || ||| |||| | ||| | | | | ||| || || || | | ||| | || | || | || | || | | |||| || ||| | |
GCTTACAGGAAAGCCACTCTTTCCAGGGAAAAATGTTGTGCATCAATTGGATCTCATGACTGATCTACTTGGCACTCCTTCAGCAGAATCCCTTGCTAAGgtatattcaatccttgcaagcttgtgccttcactcaagtgcaatgtattgactcctcac-tagtctg-tgtgttcacttctttatgcagaattcttcgcaac
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 5
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt-
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GCTCACAGGGAAGCCACTCTTTCCAGGGAAGAATGTTGTGCATCAGTTGGATCTTATGACTGATCTACTTGGTACACCTTCAGCAGAGTCTATCTCCAAGgtatgctcactagttactaatgagac-cttaatctcactagttactaacgagtctcattttctgtattccaggcagtactctgtttcagatttttaggtac
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagt------atatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt----------------------------------------------------------------------
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GCTATTAGGGAAGCCGCTATTTCCTGGCAAAAATGTGGTTCACCAATTGGATATTATGACCGATTTTCTTGGCACTCCACCACCTGAAGCCATATCAAAGgtcagttatactattccagatgcttgttttagttttttcaaagtttagaactttgaattatagctctctttcttctgtggaagaagaaaaaaaagattattcactagttgaaaaactattggatcaagcaactttgagttgtattgtaaatgaatatgctatcttcaaattgtcag
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaat-tgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt
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GCTCACTGGGAAGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTGGTACTCCTCCTCCCGAAGCTATTGCAAGGgttagttggtagagttatctatttctgtttgctaaaacttgcatgctagaatttctgtgatgtcttatgacttatgaattaaaagttttataaaccatga-
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt------------------
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GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaa------tgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 5
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaa-atcaattgtgcaggcttgtgacatggtataatgggagtaattctaaattt--ccaatgttcctttt
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GCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTTCTGCTGAATCAATCGCAAGGgttagt-tatctcattctaattctgttttttctggtcactaattg-acagactgattgtatgttccaagtggacactctctgaatttggttagctttctttt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207719971|gb|GD704458.1|GD704458EST: ATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGG ATTCGAAATGAAAAAGGCTGAAAGGTATCTTA
genomic: ATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatat ... aattttacagATTCGAAATGAAAA-GGCTAAAAGGTATCTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC