Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc...

Basic information

species Glycine max
transcript GLYMA05G33560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc------
 || || ||||| |||||||||||||||||  | || |||||||| ||||| ||||| ||||| ||||| || ||  | || |||||||| ||||| ||||||||       | |  |  ||   | | |      ||   | || | ||||   ||   | | |   |     ||||   | ||||   |     |  |      
ATCTTACCGTGCACCTGAGGTTATTTTGGGTTTGCCTTATGACAAAAAGATAGATATGTGGTCACTTGGATGTATACTAGCTGAACTTTGCACTGGAAATgtaagtg-----gttactgcataccggttattgcaccacttaatt-gttaaatcctttcatctcatggctttctattttctttttgactgaacttgtcgctgtttt

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaagg----accaaagat-gattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc
 || || ||||| |||||||||||  ||||  | || |||||||| ||||| ||||| ||||| ||||| || || || ||||||||||| ||||| ||||||||     ||   | || |  |||| | ||||| ||     ||  | |  |   |  |||  || || || |  ||  ||   ||  | |   | |  | |  
ATCTTACCGTGCACCTGAGGTTATACTGGGCTTGCCTTATGACAAAAAGATAGATATATGGTCACTTGGTTGTATATTAGCAGAACTTTGCACTGGAAATgtaagtggttactgcatattggctaatattgttcataactgt-tattgctatacttatggttatgtgtt-gttcatgatgtt---ctggtaatgtaaaggagtag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagtt--ttagtaccagaaatttatctcttgagccataaaatttc--
 ||||| |||||||| || || ||| | || ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||  |||     ||| |    |||| |||     ||||  ||  |||| |   | || |   ||| |||  | | |  |  |||| | | |    || |  
ATCCTACCGTGCTCCAGAAGTCATTCTTGGGCTTCCATATGATAAAAAGATAGATATCTGGTCACTTGGCTGCATTTTGGCAGAACTATGTACCGGCAATgtaagttccagcatcgatgataccagttaaaagctttataa--ttatataatccactaagctagctaggaccctataat-gtaacttgcgtc-tgcttttgcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatg-attaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctctt-gagccataaaatttc
||| ||||| || || || || |||||||||||||| ||||| || ||||| ||| | ||||||||||| ||||| || || ||||| ||||| ||||| |||||  |   |  |  ||| |  | || ||        |   | || || |    ||   ||||   |    ||||   | ||   |||  | ||||||  
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt--

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccata--aaatttc--------
||| ||||| || || || || |||||||||||||| ||||| || ||||| ||| | ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||  |   |  |   | |  ||| |   |||    |  |||||| |      ||   ||| || || ||||  | |   | ||    |||   | || |        
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctggaatt---tcagctagat---aatattgtctagtttggttgttgatt---tttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag

upper sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccataaaatttc
||| ||||| || || ||||| |||||||| |||||||||||||| ||||| ||| ||||||| ||||| || |||||||| |||||||| |||||||||||||| ||   |  | ||   |||  |||      | || || | ||  || |||| |||| ||  |        |   | | | |||  |  |  |   
GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtttttctcctacatatgaattatggcaagcagtggagtgtttttctttcttctccttttttggagaaaataggtagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296155|gb|FG989740.1|FG989740
EST:     GATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAAT                         GTCCTCTTCCGAAATGATTCACCTGCATCATTACTTGCTCGGGTGATTGGG
genomic: GATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggacca ... cattttgtagGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCTCGGGTGATTGGG