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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTCATGGCCAGACTAATATTTTGGTTTATACTGGAATATGCTCGATAGTTGGGTCCTTGACAgtaagtgactctacccagttaaccttgtcatatgtgatatttttatcattttggatatttctgtactttctagctgttgactgagttgtataccatagtccaccatttgttttatctttctgataaaatactaatttctcag

Basic information

species Glycine max
transcript GLYMA05G33020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33020.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
TGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTCATGGCCAGACTAATATTTTGGTTTATACTGGAATATGCTCGATAGTTGGGTCCTTGACAgtaagtgactctaccc----agttaaccttgtc---atatgtgatatttttatcattttggatatt-tctgtactttctagctgttgact---gagttgtataccatagtccaccatttgttttatctttctgataaaatactaatttctcag---------
 || ||  || |  |  |  | ||||||||||| |||||  ||||||| || ||||| |||||||||| ||| |||||||| ||| |||| || |||||||||||| |   |         | |||| |  |    | || |  |  |||| |  ||||||    | |||   |  | ||  |||   ||   ||  | || | | |     | ||  || |||| ||| |||||   |    |  |||||           
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag