1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCATCAATGCGGTAGGTCTCTAATGACAAAGAAAATACAAGGATTGTTCTTCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattattttaaagttcatctgtactattaattctaatactttgttgtttttttggtgttgtgacttgtgagttgtatcatgggtagttgactcctcatggctatttgggcttcctgctaatctagcaagctttcttcccctgtttactattcctttag
species | Glycine max |
transcript | GLYMA05G32720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAG GGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTTEST: gi|193726384|gb|FK656114.1|FK656114
genomic: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattatttt ... attcctttagGGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTT
EST: TCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAG GGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTTEST: gi|6482231|gb|AW201502.1|AW201502
genomic: TCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattatttt ... attcctttagGGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTT
EST: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAG GGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTTEST: gi|193684538|gb|FK625188.1|FK625188
genomic: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattatttt ... attcctttagGGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTT
EST: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAG GGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGAACAAGTAAGCCAGEST: gi|7692722|gb|AW760822.1|AW760822
genomic: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattatttt ... attcctttagGGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGA-CA-GTAAGCCAG
EST: TCTCCGGTCAGATATTTGTAACTACAGGCTATGAAGAAGCTGCAGCACAG GGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTT
genomic: TCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattatttt ... attcctttagGGTATCATTTCTGGTATCAATGCTGCTAGACATGCAGACAGTAAGCCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCAATGCGGTAGGTCTCTAATGACAAAGAAAATACAAGGATTGTTCTTCTCCGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGgtattattttaaagttcatctgtactattaattctaatactttgttgtttttttggtgttgtgacttgtgagttgtatcatgggtagttgactcctcatggctatttgggcttcctgctaatctagcaagctttcttcccctgtttactattcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG