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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag

Basic information

species Glycine max
transcript GLYMA05G32030.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag
||||| || |||||||| ||||| || ||||||||||||||||| || || ||||||||| ||       ||||||   |  | ||  |  ||||    ||   |  |||||     |||| | |  |  ||    ||| | | ||    ||| || | |  ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAgtaagga-----cttgtgtagttacgttgcaattaataatttgctggtgttttct-----ttcattgtgataacta---tcaaactattgtg-gtcaaactttaaag

upper sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag
||||| || |||||||| ||||| || |||||||||||||| |||||||| ||||||||| |     ||| |||  |  | | ||       |      |   ||| |   ||||  ||   | ||  |  |||||  |     |    |||  | || || ||
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaaga---ctttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag

upper sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag----------------------------------------------------------
|||||||| |||||||| ||||| || ||||| ||||||||||||||||| ||||||||| | | ||| ||  | | | |||  |   |   |   |   |||||||||  ||   | |   |||| || ||  |  ||   |  | | |  || ||| | |                                                            
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttc-tttcattgttcttttaattacttcta-ccatttattcttttattgttcttttaattacttgtaccat--ttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

upper sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttt-----tgtgttactgtgatgacagcaa--tagcaggccatttattt----cttgtgtttcaatttagttgctg--atttcagaatcttccatgtctaattgtgtag-------------------------------
||||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||| ||  | ||||     ||   | ||||  |  |||| |  | ||      ||||  |     |||| ||  | ||     ||||  | |||  | |  |    ||    |||| |||                               
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggatttttttatatttgcaatcctgttttaccagctactttgcgtttggtttaaatagtatttgtattgaagttcttgagctggcacttcgaagttcttaccgttattttgt-tagagccagtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426310|gb|CA937830.1|CA937830
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|5342415|gb|AI794699.1|AI794699
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|120496298|gb|EH224465.1|EH224465
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|19271260|gb|BM887516.1|BM887516
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAA
EST: gi|18039945|gb|BM308239.1|BM308239
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|24206051|gb|BU965304.1|BU965304
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|37994245|gb|CF805991.1|CF805991
EST:     GCCATGGCCTAGACTGAGAAAATTGCACTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: GCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|26047818|gb|CA784480.1|CA784480
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|37997022|gb|CF808611.1|CF808611
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTG
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTG
EST: gi|17519815|gb|BM188857.1|BM188857
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|7925406|gb|AW831371.1|AW831371
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|308098502|gb|HO760243.1|HO760243
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|17400997|gb|BM177779.1|BM177779
EST:     TTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCATAACAA                         GTCCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTC
genomic: TTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTC-GAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTC
EST: gi|151401327|gb|EV271141.1|EV271141
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|22541281|gb|BU091124.1|BU091124
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTCTGGTGTCTAGACCG-CAGGATTATGTTCGTGCACAAATACTCT
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTT-T-GTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCT
EST: gi|23731285|gb|BU763760.1|BU763760
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGGTCGTGGACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|7795120|gb|AW780517.1|AW780517
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192295223|gb|FG986942.1|FG986942
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|17022950|gb|BM093984.1|BM093984
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192309222|gb|FG999449.1|FG999449
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|12691513|gb|BG157849.1|BG157849
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
EST: gi|192299616|gb|FG989998.1|FG989998
EST:     CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA                         GTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA
genomic: CTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggata ... aattgtgtagGTCCGTTTGTGTCTAGATCGCCAGGATTATGTTCGTGCACAAATACTCTCA