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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGGGCTTCTTTGTACCGTACTTGATTGGGAGTATCTCATTAGTGGTTTTGGCTGTGGGTAGCATATCCCCAGGgtaagaagaatagtgtttgccatgtagcaatggataccccgcttcagtgttaaatgttaattttctttacattaatgctccaagttgctagtgcag

Basic information

species Glycine max
transcript GLYMA05G31720.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31720.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 5
GATTGGGGCTTCTTTGTACCGTACTTGATTGGGAGTATCTCATTAGTGGTTTTGGCTGTGGGTAGCATATCCCCAGGgtaagaagaatagtgtttgccatgtagcaatggataccccgctt-cagtgttaa----atgttaattttctttacattaatgctccaagttgctagtgcag-----------------------------------------------
||||||||||| ||||| || ||| |||||||||| ||||| ||| | ||||||||| | || ||||| ||||| |||||||     ||    |  |||||   |||   | |    |      ||||||     ||||||| || | |  |   |||  |  |       |||| ||                                               
GATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGGgtaagcg--ttaaatctgtccatgatacaagttacatttagaggattgtgttaggatcatgttaagttgcatatc--caataattgagagacagagtgtagagaagattaacctcagaactcactgacactctttatctgctctgtag