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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag

Basic information

species Glycine max
transcript GLYMA05G31450.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgggttattaaattttatttatg--caaaataaataaattggtgaattttgctttgtgttttcgtcag-------------------
|||||||| ||| | || || || ||  | ||||||||||| ||||| |||||    || || ||||||||||| ||||| |||||||||||||| || ||| | |  ||   | |  ||   |   |  | ||    ||  |||| ||  | |||     |   || || ||||   ||       |  | |                    
AACGAGGCGGAGGTATCACCATCAACACTATATGCCATTGCCTGTGTCATGGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACCTTTGTGCCTGgtgcgtggtttggtgtgtttgcaaaa-gcttcatggtgttgcatttctgttccaaagtttcatggtgttgtatttctgttccaaggcttattatacctgttgcatgttcgtag

upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgg-gttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag
 | |||||||||||||| ||||| ||  | || ||||||||||||||| | || || |||||||| ||||||||||| || || ||||| |||||||| |||   | | | |  | |||   ||  | |  ||| | |  || | || |  | | |||  | |||  |   || |  | |             
GATGAGGCTGAGATTTCTCCTTCTACACTTTACGCCATTGCTTGTGTTCTTGAGAACGTTCCTTTTATCAATGGAAGTCCACAAAACACTTTTGTCCCTGgtaactaaattaa-actatatctagatagtattaatgaccttcaattttctatagtaatcacatt--ttgcttatattatacag---------

upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag
 | ||||||||||| || ||||| ||  | ||||| |||||||||||| | ||     | || |||||||||||||||||||| ||||||||||| |||||||   | | | | | | ||| |   |   | || ||    |||   || |||  |       ||    |||||  |  | ||||     ||
GATGAGGCTGAGATCTCTCCTTCAACACTTTATGCGATTGCTTGTGTTCTTGAGGGAATCCCGTTCATCAATGGAAGCCCTCAAAACACCTTTGTTCCAGgtttcatgtagttgagttttaatcactcattgatcaatcaatat---tggaaatca-------tgactgattttcttgggggtttgttgtag

upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctt-tgtgttt-tcgtcag-----------------
|| ||| ||||||| || |||||||||||||||||  | |||||||| |||||||||||||| || |||||||||||||| |||||||| ||||| |||||||| | ||     ||| |  || | |  ||     ||  ||||  || ||  ||| |      |   ||| |  ||  ||| ||| | ||||                  
AATGAGCCTGAGATCTCTCCTTCCACCTTGTATGCTCTGGCTTGTGTCATGGAAAATGTTCCCTTTATCAATGGAAGCCCACAGAACACTTTTGTTCCAGgttcttaatctgaaattttccttttctatgt----gaaggttatgaattcatcatagagggggcgtctaatctcactcatgtttttgttgtcaatctttgtatgtcttcag

upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgt--tcattattgattatt--attattatgtgggttattaa--attttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag
 ||||| | || || || || |||||  | || ||| | || ||| |    ||   ||||||||||||||| || ||||| |||||||| ||||||||||||   | |  ||  || |   | | ||    || ||  |||  | | | | ||||||   |  ||     |                           
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCATGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgttttttctcccagtttttctcggtttgctaagaagtgtgtgtatgcacggtgcatggccag---------------------------

upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27629 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgt--tcattattgattatt--attattatgtgggttattaa--attttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag
 ||||| | || || || || |||||  | || ||| | || ||| |    ||   ||||||||||||||| || ||||| |||||||| ||||||||||||   | |  ||  || |   | | ||    || ||  |||  | | | | ||||||   |  ||     |                           
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCGTGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgttttttctcccagtttttctcggtttgctaagaagtgtgtgtatgcacggtgcatggccag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545668|gb|FK500815.1|FK500815
EST:     TTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: TTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193717547|gb|FK652889.1|FK652889
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|22525230|gb|BU084041.1|BU084041
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|7028502|gb|AW458285.1|AW458285
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|15285656|gb|BI469547.1|BI469547
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|27424631|gb|CA936151.1|CA936151
EST:     CTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: CTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|207810457|gb|GD781147.1|GD781147
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACC-TTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193598415|gb|FK553671.1|FK553671
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208333231|gb|GE128236.1|GE128236
EST:     AAAATTGTTCCTTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: AAAAT-GTTCCTTT-CATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|7639970|gb|AW734281.1|AW734281
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGG
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGG
EST: gi|20449596|gb|BQ253720.1|BQ253720
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193391842|gb|FK354655.1|FK354655
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAG
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAG
EST: gi|9259990|gb|BE348137.1|BE348137
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193559455|gb|FK515388.1|FK515388
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208055212|gb|GD853173.1|GD853173
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193619363|gb|FK571791.1|FK571791
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTG
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTG
EST: gi|193533164|gb|FK491052.1|FK491052
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACNGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208180147|gb|GD978882.1|GD978882
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208137406|gb|GD938854.1|GD938854
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCC
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCC
EST: gi|208289438|gb|GE085829.1|GE085829
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|192301388|gb|FG994712.1|FG994712
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208274895|gb|GE066385.1|GE066385
EST:     GAAAATGTTCCTTTCATCTAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTG
genomic: GAAAATGTTCCTTTCATC-AATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTG
EST: gi|208071543|gb|GD872262.1|GD872262
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193614156|gb|FK565894.1|FK565894
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|193564976|gb|FK520133.1|FK520133
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|15203303|gb|BI426071.1|BI426071
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|120529530|gb|EH257664.1|EH257664
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|8670153|gb|BE191260.1|BE191260
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|10231165|gb|BE800112.1|BE800112
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|15287101|gb|BI470992.1|BI470992
EST:     CAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: CAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|13312611|gb|BG406262.1|BG406262
EST:     GGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|27425475|gb|CA936995.1|CA936995
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|9986213|gb|BE660321.1|BE660321
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|9204872|gb|BE331096.1|BE331096
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|208096888|gb|GD896725.1|GD896725
EST:     GAAAATGTTCCTTTCATTCAATGGAAGCCCTCAAAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GAAAATGTTCCTTTCA-TCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|14259658|gb|BG882566.1|BG882566
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCC
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCC
EST: gi|20498701|gb|BQ273631.1|BQ273631
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
EST: gi|6913694|gb|AW395224.1|AW395224
EST:     GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG                         GGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattatt ... ttttcgtcagGGCTGATTGATCTGGCCATCAAGAGGAACAGTTTGATTGGAGGAGATGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGAGGCTGAGATTTCCCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgttcattattgattattattattatgtgggttattaaattttatttatgcaaaataaataaattggtgaattttgctttgtgttttcgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG