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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCCTTCTGTTTCATTATGATGGCCGAACAACGGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaattctatgcttaaattttcattgtggcatattttcagttaatattgtttaccaaacttaaaatggtttgttatttctttcgcctcttag

Basic information

species Glycine max
transcript GLYMA05G30850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 5'ss of exon 3
CGATCCTTCTGTTTCATTATGATGGCCGAACAACGGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaattctatgcttaa-attttcattgtggcatattttcagttaatattgtttaccaaacttaaa-atggtttgtt--atttctttcgcctcttag------------------
| |||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||   |||||||||||| || ||||  | |||||| |||||||||  |   | |||  |  ||| |  |||      | ||||| ||  | | ||       | | |   ||||| ||||  |||  |||  | || |                    
CCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag

upper sequence: GLYMA05G30850.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 7
CGATCCTTCTGTTTCATTATGATGGCCGAACAACGGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTCACAAACAAACCAAATGgtaaaaattctatgcttaa-attttcattgtggcatattttcagttaatattgtttaccaaacttaaa-atggtttgtt--atttctttcgcctcttag------------------
| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||   |||||||||||| || ||||  | |||||| |||||||||  |   | |||  |  ||| |  |||      | ||||| ||  | | ||       | | |   ||||| ||||  |||  |||  | || |                    
CCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCGGAGACAAACAAAATGgtaaggagcttctgcaaaggattatttttgaacagaagtttcactttttctggtaggtttcaataagctatggtctgttttattcttttaacttcattctttgcaattttgtcctag