Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGCCAGgtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcag

Basic information

species Glycine max
transcript GLYMA05G30530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGCCAGgtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcag
 |||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||  |     | |  |  | |  ||||   |     | ||  ||||| ||||   |    ||        | || |  ||||| || ||   |  ||| |  | ||           ||| |  | | || | |||  |   |   | || ||
AGCAATGGGGGATGTTTCTGATCGTATAGGCCGGCCAACAGACAATGGTCAGgtattgaa-----tatcgtcgtcttgactgtgcatttcagagtgcttata-tatttactttccttca------tcaaaaaatatgcgttgtc--attaagggtttggtgggc--------atgtagcttacctctgatttgacaattgctttgtag

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGCCAGgtatttgaatt-gttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcag
||||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||    |  ||  ||||    | || |  | | | | || ||| | |  | ||| |||     |  ||| | |      |||  | || |   | |  |    |||  | | ||     |  ||     ||| | || ||              
GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtattgagttcagtagtactgcactgtatttttcatagt-ggctagatttgattttccttcttcagttgtatatgtg----ctatattgtaacggttatgtggcatgtttga-gctgacttctcaatggacactgattttgcag-------------

upper sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGCCAGgtatttgaattgttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcag
 |||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||  |     | |  |  | |  ||||   |     | ||  ||||| ||||   |    ||        | || |  ||||| || ||   |  ||| |  | ||    |                                          
AGCAATGGGGGATGTTTCTGATCGTATAGGCCGGCCAACAGACAATGGTCAGgtattgaa-----tatcgtcgtcttgactgtgcatttcagagtgcttata-tatttactttccttca------tcaaaaaatatgcgttgtc--attaagggtttggtgggcat------------------------------------------