Sequence
atgc intronic sequence ATGC exonic sequenceCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcctagtaacatgttgatgccacattaaattactttcatggtcaacttttgtatgaaaattaagatttatcatcactgtggtcatctgcttaca...
Basic information
species | Glycine max |
transcript | GLYMA05G30430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 5'ss of exon 4
CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcctagtaacatgttgatgccacattaaattactttcatggtcaacttttgtatgaaaattaaga-tttatcatcactgtggtcatctgcttaca------
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CTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGgtactttcctggttgcacgttattaacttatgatactatact-ataat-gatctcagcacgactagtatgaactcatcttgaggtccttcccccacttttgtcacag
upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G037683_T01 (Zea mays), 5'ss of exon 4
CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcctagtaacatgttgatgccacattaa-attactttcatggtcaacttttgtatgaaaattaagatttatcatcactgtggtcat-ctgcttaca
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CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGATTGGTCAGGCTTTGAAGTGGCAACAGCACCAAGgtattctctttgctgcacactattaaaaggatgctaccatgtatatg-ttaattgttatgaaatagtcatgag--attttcaatcttttcctattgcgtag-
upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 5
CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgt-aatttcctagtaacatgttg-atgccacattaaatt--actttcatggtcaacttttgtatgaaaattaagatttatcatcactgtggtcatctgcttaca
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CCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacattttattgtaatgttgcattatgctgtgaatgtgacttgtttacttaaagtgctttcaaaatcttatatat-ttatttgttttgtaatacactt---
upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S136_176V6.1 (Physcomitrella patens), 5'ss of exon 5
CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcctagtaacatgttgatgccacattaaatta------------ctttcatggtcaacttttgtatgaaaattaagatttatcatcactgtggtcatctgcttaca------------------------------
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CTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGATCGGTCAGGCATTGAAGTGGCAACAACATCAAGgttcttcatgcctctaattttgatcataagctatatcatttatctttattcttgcatcacttaatttcgatcctaatttaatttttattcaaatcatacacaatgatgtatatattctgaagtcgagtgtggttggttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408433|gb|EV278241.1|EV278241EST: CCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAG GGTTACTTCCTCCA
genomic: CCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcct ... gctttctcagGGTTACTTCCTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAGgtaatttcctagtaacatgttgatgccacattaaattactttcatggtcaacttttgtatgaaaattaagatttatcatcactgtggtcatctgcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG