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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagttatttaaatatcttatgctatcttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcag

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 5
GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagttatttaaatatcttatgctatcttatgacaggttatggaatccttgaagtttcatattaaggtctgtttccttgcag
| | ||| |||||| | |||||||| || || ||||| || |||||||||||  |||||||||| || |||||| |||| ||||||||||| || |||||  |  ||||       ||  || || ||  ||||  |  | |||  | |  |  |  |      | | || | | |  |   ||
GCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTCAAATACAACAAAGACCAGgtcggttgttaccacgccat--taagcaatagtatgg-atatcatgtgaac--tacatctgtgatcttatgtatctattttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208231223|gb|GE033482.1|GE033482
EST:     ATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTGGGA
genomic: ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA
EST: gi|208261580|gb|GE060425.1|GE060425
EST:     ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAG                         ATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA
genomic: ATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAGgttagaagtt ... ttccttgcagATTATTCATGTTAATCTCACTCAGGATATCCCAAAGCCTTTGGAAGTAGGA