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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGGGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaacatgccatttattttcttaatggaaagttaacaggagtatgttagcatatttgttcaatcatacattgc...

Basic information

species Glycine max
transcript GLYMA05G30160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g65450.1 (Oryza sativa), 5'ss of exon 5
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTT----CTTCTCGTG-----GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaacatgccatttattttcttaatggaaagttaacaggagtatgttagcatatttgttcaatcatacattgc
          || ||| |||| ||||| || || ||  ||     | | ||             ||||||||||||||||||||| | || |||||| ||||||| ||||| || |  ||    |  | |  | || |    ||  | | ||| ||   || |||  |||   |     || |    | ||| ||  || || ||    
---------GGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGgt-tagtagtgg-cgtggtactgtgaatt----tgtgactgattctc---attgaa--ttatttgctcattgct--tctgtttctttcat-atgcag---

upper sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G114172_T03 (Zea mays), 5'ss of exon 4
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaaca-tgccatttattttcttaatggaaagttaacaggagtatgttagcatatttgttcaatcatacattgc--
          || ||| |||| ||||| || || ||  ||     ||   |         |   ||||| ||||||||||||||| | || |||||| |||||||||||||         | |  | |||     | || || |   || |       |  | |    | | |       |    || |  |  |    ||      |||  
---------GGATCACTTGGCTATGATAACTGTGCAATCTGAAAATCAAAGTAGAAAGAAGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactctatttctgtgct-cgtattaccaatttaatgtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcag

upper sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G427526_T01 (Zea mays), 5'ss of exon 1
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaacatgccatttattttcttaatgga--aagttaacaggagtatgttagcatatttgttcaatcatacat---tgc---------------------------------------------------------------------------
          || ||| |||| ||||| || || ||| ||     |||  |         | | ||| | ||||||||||||||| | || |||||| ||||||||||||| || |  |  || |  | |  |           | ||||| | |   | |||   | ||   ||      | || ||   ||  | |  || | |     |||                                                                           
---------GGATCACTTGGCTATGATAACTGTGCAGCCTGAAAATCGAAGTAGAAACAAGATTTTTCACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgt-tagtattctatttatttctgtgcttgtgttaccaatttaatgtgaaactgggttaggtcctcatctaattctttgccgcttgctcctgtcttccccatatgcagtagcctgtactacaacgaaaagaacaccatcatgtttgatgatctaagaaggaatttcgtcatgaatccacag

upper sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 5'ss of exon 5
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGGGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaacatgccatttattttcttaatggaaagttaacaggagtatgttagcatatttgttcaatcatacattgc
 || ||||| |||||  | |||||||| || |||||  |   ||||||||||  ||||||||||||||| ||||||||||| |||| | | || |||||||| | ||  |  || || |    |   |    |     | | || ||||  |    |   ||        || |   |||  | || | | |   |  | 
AGCTCTTCTGGACCATTTAGCAATGATTACAGTTCATTCAGATTCTCGTGGGCCCTTTGATTGCAAGCCACTTGGTTTGATATGGGGTCAATTTCCTGAGgtctgatattccatttttttttttcctcccctagtttttcttttctcttcgtcttcatcaaatccatagctggttaaataagtctttattaaagaaaagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393341|gb|EV263216.1|EV263216
EST:     GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG                         TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTT
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTT
EST: gi|208295827|gb|GE092202.1|GE092202
EST:     GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG                         TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: gi|192305353|gb|FG994035.1|FG994035
EST:     GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG                         TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: gi|192305352|gb|FG994034.1|FG994034
EST:     GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG                         TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
genomic: GGGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
EST: gi|7685022|gb|AW755670.1|AW755670
EST:     GATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAG                         TTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT
genomic: GATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattat ... tctatttcagTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTAGAAGAAATTTT