1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACGCAAGTTTTTCATTTATGTGCAAAACTACAACGAGAGCGATCCCAAGACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgcacttgttttcttgccgcgtccattatttattcatatttaacatctcagactcagcttttgtgttgccttcatagtctgcataaacatgta...
species | Glycine max |
transcript | GLYMA05G30140.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGACAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|193622227|gb|FK569603.1|FK569603
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: CTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|192313375|gb|FK005147.1|FK005147
genomic: CTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|213598704|gb|DB964270.1|DB964270
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|193327075|gb|FK292368.1|FK292368
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208259467|gb|GE053911.1|GE053911
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: AAAGAGTTGATAGC AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|192313374|gb|FK005146.1|FK005146
genomic: AAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|207755010|gb|GD727407.1|GD727407
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208315534|gb|GE114296.1|GE114296
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208127908|gb|GD922140.1|GD922140
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: GGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208182690|gb|GD980516.1|GD980516
genomic: GGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGGCAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|19347279|gb|BM892159.1|BM892159
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|6915949|gb|AW397479.1|AW397479
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|193497014|gb|FK459492.1|FK459492
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|7924853|gb|AW830879.1|AW830879
genomic: ATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|120533574|gb|EH261707.1|EH261707
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208056662|gb|GD850351.1|GD850351
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|254342789|gb|GR858951.1|GR858951
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCEST: gi|208154706|gb|GD955759.1|GD955759
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: ACCCACGAGGGGATGGACTTGACAAGAGTGTCTACTAAAGAGTTGATAGC AAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgc ... cctgtgacagAAAATACGGCCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGCAAGTTTTTCATTTATGTGCAAAACTACAACGAGAGCGATCCCAAGACCCACGAGGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtgcacttgttttcttgccgcgtccattatttattcatatttaacatctcagactcagcttttgtgttgccttcatagtctgcataaacatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA