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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggattctaattccaagttagtttggcacctgctctagcctttgtttacagttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcag

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29820.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 4
TGAAATATTGGCTGTCAATAACATGGAGGTAAAGGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggattctaattccaagttagtttggcacctgctctagcctttgtttacagttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcag
|||||| ||| |||| |||   ||||| || |  || |||||||||||||||| ||||||  |||| |||||||| |||| ||||| ||| ||| || ||||||||       |||   | | |  ||  ||  |  |  ||  ||  | | |    || | |  | ||| ||||    | |   || | || |  ||  || | |    
TGAAATCTTGTCTGTTAATGGAATGGATGTCACAGGGAAATCAGCATTTGAAGCATCATCTTTGTTACAAGGCCCAAATGAAACATTTGTCACTCTTGAGgttttg-------attatgaatca--ttcacattta-tggagtgttactgtgctaacttctgtcatgtaacttttccaatgactgttcaaatcaa-atggtttcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533174|gb|EH261307.1|EH261307
EST:     AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG                         GTCAAGCATTGGCA-CTGTGGACCCGTTGAA
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCAT-GGCAACTGTGGACCCGTTGAA
EST: gi|9258053|gb|BE346200.1|BE346200
EST:     AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAN                         GTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
EST: gi|120532592|gb|EH260725.1|EH260725
EST:     AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG                         GTCAAGCATGGCAACTGTGGACCCGTTGAAT
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAAT
EST: gi|26057180|gb|CA800094.1|CA800094
EST:     AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAG                         GTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA
genomic: AAGTATCATCCCTGTTGCAAGGCCCTAATGGAACATCTGTGACTATTCAGgttttggatt ... ttactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAA