Sequence
atgc intronic sequence ATGC exonic sequenceCCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccattagctctattaagacagtagaaatttgatttttcttatgcaataatccatgcttatctatcactgagaaatggatgtgttaacgttgact...
Basic information
species | Glycine max |
transcript | GLYMA05G29330.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G18810.1 (Arabidopsis thaliana), 5'ss of exon 5
CCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccattagctctattaagacag--tagaaatttgatttttcttatgcaataatccatgcttatctatcactgagaaatggatgtgttaacgttgact
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TCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTCTGTTATTGTTGGTCCAAAGGAAGGAGATACACCTGAGAGACAAAAATATAATCAGgtcggtgaatttttctgaatggaatttcttaaaagctttgaactttagattctagctttgagaaatgactctgtttggatattggttataatgcag------
upper sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 5
CCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccattagctctattaagacagtagaaatttg---atttttcttatgcaataatccatgcttatctatcactgagaaatg--gatgtgttaacgttgact-------------------------------------------------------------------------------------------
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CCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatt-tgagcattac-aaaatgacagaaatttgtaggttctgcttgt-tgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208152215|gb|GD950104.1|GD950104EST: TTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAA GGAATTAAGTTCTTTGAGCCAGAG
genomic: TTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccat ... ttatgtgcagGGAATTAAGTTCTTTGAGCCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGGAAGGAGACACTCCAGACAGAGCAAAATACAGCCAAgtatgtccattagctctattaagacagtagaaatttgatttttcttatgcaataatccatgcttatctatcactgagaaatggatgtgttaacgttgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA