1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTTCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcattaatggaaatcaatgtactctgtcaatctgtttgctggactttgtctgcaatgtaaataaaatacatgaaaacttttagggttaattacagt...
species | Glycine max |
transcript | GLYMA05G29080.7 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAT-G-G -AGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|208309137|gb|GE102061.1|GE102061
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCEST: gi|254328642|gb|GR833014.1|GR833014
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGC
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|254333165|gb|GR850415.1|GR850415
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAT-G-G -AGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|208055190|gb|GD853711.1|GD853711
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|10709621|gb|BF009345.1|BF009345
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACGTCTGACATCCCTGAAGATGGAG CAGAAGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACTATGCATEST: gi|254328641|gb|GR833013.1|GR833013
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: CTGAGGGACAATCTCACCCTGTGGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAG-TGGATTCTEST: gi|208292547|gb|GE091163.1|GE091163
genomic: CTGAGGGACAATCTCACCCTGTGG-ACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193614275|gb|FK565929.1|FK565929
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|13477504|gb|BG507360.1|BG507360
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|10846315|gb|BF069233.1|BF069233
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|207827519|gb|GD800742.1|GD800742
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAT-G-G -AGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|10846261|gb|BF069189.1|BF069189
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: ACTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGATGAACAAAAGGTGGATTCTGCCCGAGCTGCTTGAGGTGACGATGCAEST: gi|17022285|gb|BM093319.1|BM093319
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTTAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|192309538|gb|FK000970.1|FK000970
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TTTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193666143|gb|FK612202.1|FK612202
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193619419|gb|FK571287.1|FK571287
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|254335227|gb|GR846724.1|GR846724
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193374759|gb|FK341279.1|FK341279
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGAEST: gi|151402597|gb|EV272410.1|EV272410
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|31462734|gb|CD404762.1|CD404762
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACTATCTCACCCTGTGGACTTCTGACATCCCTGAAGAT-G-G -AGAGGAACCTAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|208185797|gb|GD983822.1|GD983822
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGACCCGAEST: gi|193564590|gb|FK521427.1|FK521427
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTG-CCCGA
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193694809|gb|FK634265.1|FK634265
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGAT-G-G -AGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|21638441|gb|BM139487.1|BM139487
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: CTGAGGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGG-G -AGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGEST: gi|193475413|gb|FK440248.1|FK440248
genomic: CTGAGGG-ACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGG
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|193518055|gb|FK473526.1|FK473526
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATEST: gi|193449399|gb|FK412878.1|FK412878
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAA-GGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCEST: gi|6951823|gb|AW423891.1|AW423891
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGC
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|7795822|gb|AW781219.1|AW781219
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTTGAAGTGACGATEST: gi|254335228|gb|GR846725.1|GR846725
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG -AG-G-AACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCATEST: gi|254336493|gb|GR842672.1|GR842672
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
EST: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAG CAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
genomic: TCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcatta ... cttttaatagCAGAGGAACAAAAGGTGGATTCTGCCCGAGCTGCTGGAGGTGACGATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTTCTGAGGGACAATCTCACCCTGTGGACTTCTGACATCCCTGAAGATGGAGgtattcattaatggaaatcaatgtactctgtcaatctgtttgctggactttgtctgcaatgtaaataaaatacatgaaaacttttagggttaattacagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA