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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGGATAGTTAGCAAACTACTTGTACTTCTTCAGgtatatttatagagaattattctcaagaataatgttattatggtcattttgctaaattatcgtaattattccttcacttaattttggatattctatacatttttcag

Basic information

species Glycine max
transcript GLYMA05G28950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g49420.2 (Oryza sativa), 5'ss of exon 2
TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGGATAGTTAGCAAACTACTTGTACTTCTTCAGgtatatttatagagaattattctcaagaataatgttattatggtcattttgctaaattatcgtaattattccttcacttaattttggatattctat-acatttttcag
 || ||||| ||  |||| ||||||||||| |||||||  |||||||| || || ||||||||||||||||||||| | ||||||||   | | |||||||||               || ||      | ||  |       |||||||| |  |  ||    || |  | ||     |||||||  | || | | | |        
CGCAGCTTCTGCGATTCTAAACTTCAGCGAAAACTGCAGGCCTGATATTTTGACACCATACTTGGATGGGATAGTTGGGAAACTACTGTCATTGCTTCAGgta---------------atccttgcatttgatcatggagccttcattttg-tgcagcataaacatgaaccttttcggaaattttgtttgttttctgatag-------

upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 2
TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGGATAGTTAGCAAACTACTTGTACTTCTTCAGgtatattt-atagagaattattct-caagaataatgttattatggtcattttgctaaattatcgtaattattccttcactt-aattttggatattctatacatttttcag
|||||| |||||  |||| |||||||| || ||||||| ||||||||| || || |||||||||||||  |||||| | ||||| ||  |  | || |||||  || | | |   | |  ||   |   ||   |   | ||| | ||||   |  ||  ||  |  ||||||  | | || ||  ||| ||  |    |  |       
TGCTGCATCAGCTATTCTGAACTTCAGTGAAAACTGCAGACCTGATATTTTGACACCATACTTGGATGTAATAGTTGGGAAACTTCTATTGTTACTCCAGgtggatctcacatctagtctttaaaccttaactttaacagtatagacattagacataagcataatgtttattctgttattttaaacttgtatgcttatgatgtag-----

upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 3
TGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGGATAGTTAGCAAACTACTTGTACTTCTTCAGgtatatttataga-gaattat-----tctcaagaataatgttattatggt-----cattttgctaaattatcgtaattattccttca--cttaattttggatattctatacatttttcag
|||||||||||| || ||||||||||| ||||||||||| || ||||| ||||||||||| || ||||| || ||| ||||| |||| |||||||| |||||||    | ||| |||| |      | || | ||||     |||   ||     || |    ||||   |    || |   ||| |  |||||||||  ||||| | |   || | |||
TGCTGCTTCAGCTGTGCTCAACTTCAGTGAGAACTGCACTCCAGATATTTTAACGCCATATTTAGATGGAATTGTTGGCAAATTACTAGTACTTCTACAGgtatgacaagagaagaatcaccaccatttccacaatacaaacattcaagtagatgcagtaatgtaaaccctgtggataacatctttatccttaatttt--atattatgt-tgttatccag