Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag

Basic information

species Glycine max
transcript GLYMA05G28660.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g68010.3 (Oryza sativa), 5'ss of exon 5
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag
 || ||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||| ||| || ||    |||||||| || ||||||||    |        | |   | | |  |  ||       ||  ||       |||    | |     |||  |                              
TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAGgtgaactccactatctaagtctaaacagagttctgctcagaaacctgactgatcataggtcatcc---ttaccag-----------------------------

upper sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgat--ttattattactatttttcgcgggggg-gcattttcag
|| |||||  |  | || ||||| || || ||||| | ||| |||||||| |||||||||||||||||||| |||||   | |||||||||||||||||||    | || || |||  ||   |  || |      ||   |    ||    ||| |      ||||  || || ||    ||||   |  |    |||| |  ||
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcc-----tttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag

upper sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag
|| ||||||||||| || ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| ||  | | || ||||||| | ||||||||   |  | |  |||||         | |||    || |||   |   |     ||| |   || |   ||   | || | ||||                  
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatg---agactt--gatacaaacatcacccatt-tgaccaaattaa---atggatcctgtatttcag----------------

upper sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ15182 (Selaginella moellendorffii), 5'ss of exon 5
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag
|| || ||  |  |||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||  | |    ||  |    || |||||   ||   ||  ||    |   |   || |  |      |||     | |                                                    
GACACGGAACTTTTCGAGCAGATTGATCGTGATGTTAAGCGAACTCATCCTGATATGCAGTTTTTCTGTGGTGATAACGAGCGCGCGCACGAAAACCAGgt---ttgagtgattttttgtctgtg-gaagtttagtgatgagtgcaagcag----------------------------------------------------

upper sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ09811 (Selaginella moellendorffii), 5'ss of exon 5
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag
|| || ||  |  |||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||  | |    ||  |    || |||||  || | |  | ||    |   |  ||  |  |      |||     | |                                                    
GACACGGAACTTTTCGAGCAGATTGATCGTGATGTTAAGCGAACTCATCCTGATATGCAGTTTTTCTGTGGTGATAACGAGCGCGCGCACGAAAACCAGgt--ttgagtgatttttttgtctgtggaaggtt-agtgatgagtgcaagcag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022950|gb|CX709691.1|CX709691
EST:     GATATGCAC-TTTTCTTCTGGTGATTCCCAA-TTGCAAAAATCTAATCAG                         GAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCCAGGCGTA
genomic: GATATGCACTTTTTC-TCTGGTGATTCCCAATTTGC-AAAATCTAATCAGgtcctttatt ... gcattttcagGAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTAAACCCAGGCGTA
EST: gi|13481526|gb|BG510869.1|BG510869
EST:     CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAG                         GAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTA
genomic: CTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatt ... gcattttcagGAGGCTTTGAAGAATATATTAATTATTTTTGCAAAGTTA