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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaatttttttcttttttgtgatactaatgctttgttaaaatgatctaaaattgagtctctgtccacgatgatgtaacaatttcttcccctaaccggag...

Basic information

species Glycine max
transcript GLYMA05G28650.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G14147.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaatttttttcttttttgtgatactaatgctttgttaaaatgatctaaaattgagtctctgtccacgatgatgtaacaatttcttcccctaaccggag-------
||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||| | |||||||| |||||||||||| ||  ||||       |  |||    ||  || ||||  |   |    ||| | | ||     |   |  |||||   |||    |      |        
GTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttcatctt-------accctagcttttccttcaaatacttccaggaagagccccagtggtacactgttcaacaaaggctttgtgttgttttactttcctg

upper sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0029g01310.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaattttttt--cttttttgtgatactaatgctttgttaaaatgatctaaaattgagtctctgtccacgatgatgtaacaatttcttcccctaaccggag
|||||||| || || ||||| || ||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||   |  |  || | ||  ||| ||  |  | | |     || |     ||  | | | |  |  |    |  | |   |  ||    | | |  |  
GTTTTGATTTGTCGGAATGAAGCTGAAAAATGCTTGATAGAAACATCTATCAATTCACTGCGAATAAGCCTCAAGgtaaaacctgataactatgtttggatgcttcttatgtctcttgttgcttgtggatcaaatatatcacttcaggaacatcagtgtaactgtttccatctag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169680|gb|HO021040.1|HO021040
EST:     AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG                         GTGAAGCAGGCTGATGAACTTGAAAACATACTGACCNNNNNNNTTTCTAAG
genomic: AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaattttt ... tcgtgtgcagGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAA-TTTCTAAG
EST: gi|192327701|gb|FK020692.1|FK020692
EST:     AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG                         GTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTTTAAGA
genomic: AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaattttt ... tcgtgtgcagGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGA
EST: gi|192327700|gb|FK020691.1|FK020691
EST:     AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG                         GTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGA
genomic: AAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaattttt ... tcgtgtgcagGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAAAAATTTCTAAGA