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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCAGCAATCCTGAATGATAATGGGACACTGACTTCAGTGAATGGTAACTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaagtcccattctcaagcattgttgttaattatgtttagttgaatgttgcgaatctgagaatcctctttgatgcag

Basic information

species Glycine max
transcript GLYMA05G28570.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193633757|gb|FK582405.1|FK582405
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGG
EST: gi|207741475|gb|GD716743.1|GD716743
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193411232|gb|FK376841.1|FK376841
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|207767866|gb|GD740278.1|GD740278
EST:     CTACAATTCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|51344731|gb|CO985464.1|CO985464
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|21602019|gb|BQ612350.1|BQ612350
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|208062086|gb|GD855866.1|GD855866
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193357340|gb|FK323224.1|FK323224
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|207719242|gb|GD699975.1|GD699975
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|208291302|gb|GE094552.1|GE094552
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193402757|gb|FK367191.1|FK367191
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACT
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACT
EST: gi|208204545|gb|GE007840.1|GE007840
EST:     CAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193308221|gb|FK274888.1|FK274888
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193326241|gb|FK289322.1|FK289322
EST:     TACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGTATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTG
genomic: TACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATG-ATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTG
EST: gi|207780604|gb|GD751755.1|GD751755
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|208327901|gb|GE119413.1|GE119413
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGG
EST: gi|207764284|gb|GD735313.1|GD735313
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|193365543|gb|FK332330.1|FK332330
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGTGAAAAATATTAAGCAAACTTGG
EST: gi|208082785|gb|GD880455.1|GD880455
EST:     CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAG                         GATGGATATCAGTGGAAAAAGTGGGAAGTAGAAAAAATAATTAAAGCAAAC
genomic: CTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaag ... tttgatgcagGATGGATATCAGTGGAAAAAGTGGGAAGT-GAAAAA-TA-TTAA-GCAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTCAGCAATCCTGAATGATAATGGGACACTGACTTCAGTGAATGGTAACTACAAATCAGAAGGGTCAAGTGAAAATGCAGGAGCTGATGATAACCCAGgtatgggaagtcccattctcaagcattgttgttaattatgtttagttgaatgttgcgaatctgagaatcctctttgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT