Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatgttgagttttttgttttaaggctttttatcatttacacggttttatttatggagactgtttttgcag

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatgttgagtt----ttttgttttaaggctt--tttatcatttacacggttttatttatggagactgtttt------tgcag
|||||||||||||| ||||| |||| ||||||||| |||||||| || ||||||   || || ||  |  | ||||| || || |||||||||||||||||||||||   | ||   ||    | || ||  || | ||  ||  ||||| |||  ||  |   | | ||     || |      |||||
AAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttcttttctattcgactgtttttacaacgtttgtttcttcattcacattgtgctgactctcgatttaattctatcttatgcag

upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatgttgagttttttgttttaaggctttttatcatttacacggttt--tatttatggagactgtttttgcag-------
|||||| ||||||||||| | || ||||| ||||| |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| |||| ||    ||||   |||    | |      | | ||    ||       |   | || |  |  ||  | | |           
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtt---tgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag

upper sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 6
AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatg---ttgagttttttgttttaaggctttttatcatttacacggttttatttatggagactgtttttgcag---
|||||| ||||||||||| | || ||||| ||||| |||||||| || || |||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||    |    || |  ||| | ||||  |  |  |  |  ||   |    || ||    |    || ||| |   |   
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGTGCTCATGGAAGAATCAATCgtatgtttgtttcctttcaaatttatcttttgtgtatggtcgtt-ttcctaaatgttgataggagccttctatttgtttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193392752|gb|FK359247.1|FK359247
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|298166298|gb|HO009269.1|HO009269
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6951218|gb|AW423347.1|AW423347
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|7686619|gb|AW757276.1|AW757276
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTTCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6952016|gb|AW424084.1|AW424084
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTGCGTGCCACATAGAGTTGATGTTATCTGAAAGAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|16996874|gb|BM086246.1|BM086246
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|5058385|gb|AI736917.1|AI736917
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|14259170|gb|BG882078.1|BG882078
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|15813051|gb|BI785326.1|BI785326
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|18730282|gb|BM525790.1|BM525790
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|12772559|gb|BG237550.1|BG237550
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6666907|gb|AW278366.1|AW278366
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6913074|gb|AW394604.1|AW394604
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|7029664|gb|AW459447.1|AW459447
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|12496577|gb|BG047134.1|BG047134
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCG
EST: gi|21675575|gb|BQ627926.1|BQ627926
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|14990091|gb|BI315764.1|BI315764
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|298176448|gb|HO026683.1|HO026683
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCACCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     AGCACAGAAGCAAAGACGCCCAACATACCGAGCCCATGGAAAAATCAATC                         CTTATATGTCATCTCCCGTGCCACATAGAGGTTGATATTATCTGAAAAAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCC-GTGCCACATAGAG-TTGATATTATCTGAAAAA-G
EST: gi|10848260|gb|BF070791.1|BF070791
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|298172000|gb|HO021592.1|HO021592
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|7145918|gb|AW507840.1|AW507840
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTGCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|14990125|gb|BI315798.1|BI315798
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|298184857|gb|HO030070.1|HO030070
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAA
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAA
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGANAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|193523766|gb|FK479985.1|FK479985
EST:     ATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: ATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|24136303|gb|BU926813.1|BU926813
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAAAGTTGATATTATCTGAAAAAGAAA
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|22930393|gb|BU547532.1|BU547532
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|13562772|gb|BG550992.1|BG550992
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATN                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|5666572|gb|AI930608.1|AI930608
EST:     AGCACAGAAGCATAGACGCCGAACATACCGAGCCCATGGAAGAATCAATG                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|13312171|gb|BG405831.1|BG405831
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGGGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATC                         CTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG
genomic: AGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaa ... gtttttgcagCTTATATGTCATCTCCGTGCCACATAGAGTTGATATTATCTGAAAAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatgttgagttttttgttttaaggctttttatcatttacacggttttatttatggagactgtttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA