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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCAGCATTCTTCTTCAAATGAAGTTGGTTGTCTCTTCTTTGCTAAAGTTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgcttataaaatgttgtcttacttgaaactttacacttttggtaatgtccttgacaattgtcctatgaccaaatgatcatccag

Basic information

species Glycine max
transcript GLYMA05G26250.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398725|gb|EV268596.1|EV268596
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
EST: gi|22931701|gb|BU548840.1|BU548840
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCNNNNCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
EST: gi|9440046|gb|BE440557.1|BE440557
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
EST: gi|192330285|gb|FK020570.1|FK020570
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAG-AAGCAT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCAT
EST: gi|22523485|gb|BU082296.1|BU082296
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
EST: gi|193532272|gb|FK490188.1|FK490188
EST:     TTGCTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATCATTTTTCGAATCT
EST: gi|207737599|gb|GD716035.1|GD716035
EST:     TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGG                         GTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATC
genomic: TTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgctt ... gatcatccagGTGCATGTCTGTGATATTGATAATCCAGAGGAAGCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGCAGCATTCTTCTTCAAATGAAGTTGGTTGTCTCTTCTTTGCTAAAGTTGGTGATGGAACATATATGCAAGCACTGGGCGGTTCTACACAAACTAGGgttggtgcttataaaatgttgtcttacttgaaactttacacttttggtaatgtccttgacaattgtcctatgaccaaatgatcatccag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA