Sequence
atgc intronic sequence ATGC exonic sequenceTTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattccttagagctatcgataaccattttggttcacttcttgtcaagatattcttgctt...
Basic information
species | Glycine max |
transcript | GLYMA05G26100.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 5
TTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattccttagagctatcgataaccattt--tggttca-cttcttgtcaa-gatattcttgctt
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TTCGCGGCAGTCCAGATGTGAAATGGGAAAGCATCAAAGGACTGGAGAATGCCAAACGCCTTCTAAAAGAGGCAGTTGTCATGCCCATAAAGTATCCCAAgtaagt-tagctgtttcatgtttattggaatagaaggacatggtctcatactgtaatttacagctgtacaataattcagcctttcactagcggtagactgg---
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g48270.1 (Oryza sativa), 5'ss of exon 5
TTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattccttagagctatcgataaccattttggttca--cttcttgtcaagatattcttgctt
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TTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAgtaggtttctgtcttctcacagaaataatatatatgatatatgctcacaacataggccgtgtttagttccttttcaaatttttttttgaagtatacggac--
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G115766_T02 (Zea mays), 5'ss of exon 4
TTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattcct-tagagctatcgataaccattttggttcacttcttgtcaagatattcttgctt------
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TTCGTGGAAGTCCAGATGTTAAATGGGAAAGCATAAAAGGTCTGGAGAATGCAAAGCGTCTTCTCAAAGAAGCAGTTGTAATGCCAATTAAATATCCCAAgtaggc-ttacttctcagtg----aaatatattgtatgttatatgtgtacaacataataaatctctaataaaatttaagacttgt--acatcttgcagtatcaatta
upper sequence: GLYMA05G26100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 5'ss of exon 5
TTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattccttagagctatcgataaccattttggtt-cacttcttgtcaagatattcttgctt-----
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TTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTTAGAGAATGCCAAACGTCTGCTTAAAGAAGCAGTTGTCATGCCAATAAAGTATCCCAAgtaggtcttgctggtg-----taaatgctcattg-accctgttcactttgaaacatgcagtaatttggaaacttgtactttttgtagaataactagtgtaatatgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13789838|gb|BG652429.1|BG652429EST: GCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAA GTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCC
genomic: GCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatca ... atttgtctagGTACTTCACTGGTCTGTTATCACCATGGAAGGGCATCCTCCTTTTTGGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTATTAAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAgtaggtatcactaatcactactgaaaactttctacacataacattccttagagctatcgataaccattttggttcacttcttgtcaagatattcttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT