1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatcattttgtgaatgaccaaatataatctgttccactctctgaattctgaagatgtatttactatttttttcag
species | Glycine max |
transcript | GLYMA05G25780.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAAT GGCCGAATTTGGCCTGATTCTTGTTTTATTTCTACATATGTGATCGAACCAEST: gi|22524348|gb|BU083159.1|BU083159
genomic: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatc ... tttttttcagGGCCGAATTTGGCCTGATTCT-GTTTTATTTCTACATATGTGATCGAACCA
EST: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAAT GGCCGAATTTGGCCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAAEST: gi|207784324|gb|GD758971.1|GD758971
genomic: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatc ... tttttttcagGGCCGAATTTGGCCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAA
EST: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAAT GGCCGAATTTGGCCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAAEST: gi|193663785|gb|FK611209.1|FK611209
genomic: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatc ... tttttttcagGGCCGAATTTGGCCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAA
EST: GAAAATCGAGCAACTTTGAGGGCAAT GGCTGAATTTGGGCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAAEST: gi|193686673|gb|FK626080.1|FK626080
genomic: GAAAATCGAGCAACTTTGAGAGCAATgtatgtcatc ... tttttttcagGGCCGAATTTGGCCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAA
EST: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAAT GGCCGTAATTTTGGCCTGATTCTGTTTTATTTCTACATAT
genomic: ACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatc ... tttttttcagGGCCG-AATTT-GGCCTGATTCTGTTTTATTTCTACATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGAGCAATgtatgtcatcattttgtgaatgaccaaatataatctgttccactctctgaattctgaagatgtatttactatttttttcag
- - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA