1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattgttatgaccccttaatatttgcatgttgggaggttgttggtaaaatgtaaaaacactaagcaattgtttagcgcatgagaatggacatgag...
species | Glycine max |
transcript | GLYMA05G25730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATGTTGCTGTTCTCCTCTGGCCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|7796600|gb|AW781997.1|AW781997
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|298178308|gb|HO024043.1|HO024043
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCEST: gi|208079531|gb|GD873661.1|GD873661
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCC
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|193721599|gb|FK658755.1|FK658755
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTT-CCAAAAGGCAEST: gi|4307283|gb|AI444025.1|AI444025
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|58022693|gb|CX709434.1|CX709434
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|58019686|gb|CX706428.1|CX706428
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|7234655|gb|AW569991.1|AW569991
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGEST: gi|207811622|gb|GD783991.1|GD783991
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAG
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATTGTAGTGTCTTTTTCCAAAAGGCAEST: gi|33389688|gb|CA852895.1|CA852895
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|23729081|gb|BU762625.1|BU762625
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|193396367|gb|FK362765.1|FK362765
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAAGAG GAGCATCCTGAAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCC-AAAGGEST: gi|58014496|gb|CX701238.1|CX701238
genomic: AATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATT-AAAGAGgtgagcattg ... ttcattgcagGAGCATCCTG-AGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGG
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|9820179|gb|BE555689.1|BE555689
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|151401431|gb|EV271245.1|EV271245
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|192306503|gb|FG996207.1|FG996207
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AAATGTTGCTGTTTTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAEST: gi|6845858|gb|AW348148.1|AW348148
genomic: AAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
EST: AATGTTGCTGTTCTCCTCTGACCAGGANNCTCCTTGAATATATTAAAGAG GAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
genomic: AATGTTGCTGTTCTCCTCTGACCAGGA-ACTCCTTGAATATATTAAAGAGgtgagcattg ... ttcattgcagGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGgtgagcattgttatgaccccttaatatttgcatgttgggaggttgttggtaaaatgtaaaaacactaagcaattgtttagcgcatgagaatggacatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggagg