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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGTAAGCCATCATTGAGTGGTATTCCATTGCTGGTATTGGGGAACAAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattatgtaactttgattctaacactagaaagttagaagattgaattgatttcagtattacatgttctcctgtttatttttcttttacctttacattgctttggtgctaaaagagctatctggtatgcag

Basic information

species Glycine max
transcript GLYMA05G22480.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326937|gb|GR836546.1|GR836546
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|17022902|gb|BM093936.1|BM093936
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|17021639|gb|BM092673.1|BM092673
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208294521|gb|GE094312.1|GE094312
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGAT
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGAT
EST: gi|208329584|gb|GE127161.1|GE127161
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|208302928|gb|GE099545.1|GE099545
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|151410869|gb|EV280684.1|EV280684
EST:     AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: AAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
EST: gi|193425959|gb|FK386984.1|FK386984
EST:     GATTGACAAACCTTGGGGTTCTTGTCTAAAGAAGCTTTGACCGACCAAAT                         GGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG
genomic: GATTGACAAACC-TGGGGTTC-TGTCTAAAGAAGCTTTGACCGACCAAATgtaagattat ... tggtatgcagGGATCTGAAGTCAATTACTGACAGAGAAGTTTGCTGCTTCATGATCTCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGAGTAAGCCATCATTGAGTGGTATTCCATTGCTGGTATTGGGGAACAAGATTGACAAACCTGGGGTTCTGTCTAAAGAAGCTTTGACCGACCAAATgtaagattatgtaactttgattctaacactagaaagttagaagattgaattgatttcagtattacatgttctcctgtttatttttcttttacctttacattgctttggtgctaaaagagctatctggtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC