Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGgttaaaacattatgcctaattagtcttacatgcatcctttcattcatttttcattctgttcaaagtgcagtggtaaaatgtgtttatagaaaatagaaaactttttatctcacgattttgcgtgtatttgatcttcag

Basic information

species Glycine max
transcript GLYMA05G22420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22420.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G006977_T01 (Zea mays), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGgttaaaacattatgcc-ta-attagtcttacatgcatcctttcattcatttttcattctgttcaaagtgcagtggtaaaatgtgtttatagaaaatagaaaactttttatctcacgattttgcgtgtatttgatcttcag
|| || ||||||||||| || ||||| || || || ||||| ||||| ||||| |||||||||||  |  |||| |||||||| ||||| ||| ||||||||  |  |  ||| |  || || |||      |       | |  |  |  || |   | | |  | || | |  |    ||| | | |   ||||| |   ||  || | || |  |  |||   |   ||||  ||||
GGTCGATCAGTTTACATCAACATTCAGAAGTTTGTGCAGTTTCAGCTCACTGTCAATGTGGTTGCTCTGGTGGTAAACTTCTCCTCAGCTTGCCTGACAGgtacatccgatatcctgtatatgagttcgtggtttggaaatcctctactacttgagcgtatcctgaatgtactttt----tgtttatttcataaatatatgtctcattgt-tcgcattcatgctgattgctgat--tcag

upper sequence: GLYMA05G22420.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGgttaaaacattatgcctaattagtcttacatgcatcctttcattcatttttcattctgttcaaagtgcagtggtaaaatgtgtttatagaaaatagaaaactttttatctcacgattttgcgtgtatttgatcttcag
|||||||| ||||||||||| || || |||||||| ||||| |||||||| || ||||| |||||| |  | || |||||||| ||||| ||  | || |||      | || |  ||   | |   |  | |        | |||||||  ||||  |        |||   | |      | |  ||                                                 
GGACGTTCTGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTTACCGTTAATGTTGTTGCACTGGTTGTTAACTTCTCTTCAGCTTGTTTAACCGgtaggtttagtaagaata-ccaattcaatgt-ctcgaaaagaatcattttggattccttgtttgacacagctcttatgataatcttcag-------------------------------------------------

upper sequence: GLYMA05G22420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGgttaaaacattatgcctaattagtcttacatgcatcctttcattcatttttcattctgttcaaagtgcagtggtaaaatgtgtttatagaaaatagaaaactttttatctcacgattttgcgtgtatttgatcttcag
||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||||||||| | || |||||||| ||||| ||  |||||||| | || |      ||      |  | | | |||       ||  ||  |  || |||   || |  | |  |      | ||| |      || |    ||||  ||      |||| |    | || |       
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagaccccatct------tgcttcttccatttcaaagttacttccttgttttgtc--aaataaacttct------tcttttttctccctacattttttttattccttttttttttcaaacacttcag------

upper sequence: GLYMA05G22420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGACGTTCAGTTTACATAAATATTCAAAAATTCGTACAGTTCCAGCTTACTGTAAATGTGGTTGCATTACTGGTGAACTTCTCATCAGCATGCATGACAGgttaaaacattatgcctaattagtcttacatgcatcctttcattcatttttcattctgttcaaagtgcagtggtaaaatgtgtttatagaaaatagaaaactttttatctcacgattttgcgtgtatttgatcttcag
||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||||||||| | || |||||||| ||||| ||  |||||||| | || |      ||      |  | | | |||       ||  ||  |  || |||   || |  | |  |      | ||| |      || |    ||||  ||      |||| |    | || |       
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaagaccccatct------tgcttcttccatttcaaagttacttccttgttttgtc--aaataaacttct------tcttttttctccctacattttttttattccttttttttttcaaacacttaag------