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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtattcacacatgtgttcccatatatattcatattaataagttttattcttgcag

Basic information

species Glycine max
transcript GLYMA05G21910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G13320.1 (Arabidopsis thaliana), 5'ss of exon 9
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgag-gtttcagttcttgtattcacaca----tgtgttcccat-----atatattcatattaataagttttattcttgcag----------------
| | || ||| |||| ||||| |||  ||| ||||||||  |||| ||||| ||| ||||||||||  | ||||| ||||||||||||||||| || || ||  |      ||||||||   |   |||    |  ||||         |||||  | | |   | ||    |   |  ||                 
GAATATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAACGCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGgtatgcagagtagttcttgagctgtaacaactttaggttcttgattccgatatagccttgtccctgagacacaacttaacattatctcacttctacag

upper sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G55720.1 (Arabidopsis thaliana), 5'ss of exon 8
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagttcttgtattcacacatgtgttcccatatatattcatattaataagtt-ttattct----tgcag
| | || ||| |  | ||||| |||||||| ||||||||  |||| ||||||||  |||| |||||  |||| || ||||||||||||||||| || || ||  |    ||  |||  |        |||| ||  | | | |  |    |||  || || |||||||    | |||
GAAGATACCAATCTCTTTTATCAGTGTCATCTTGCTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGGTGCGATTATGTTTGCCATGAAAGACAAGCTGgtacgtaaacaagtctctttcattttgatgtctttgcttcttttctttagttataaatttattattctcctctacag

upper sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 8
GGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttcagtt--cttgtattcacacatgtgttcccatatata--ttcatattaataagttttattctt--gcag
| |||| || ||  |||||||||| || || ||||||||| | || ||||||||  | || || || |||||||| |||||||| ||||||||||| ||||||||  ||    |  |||| |||    |||||||| |  |   ||  ||| ||  | | |  |    | ||  ||||
GAAAATGCCTGTTTCATTTATTAGCGTGATTTTGCTTCCAATTGTAGGGAATGCTGCAGAGCACGCAAGTGCTATTATGTTTGCTATGAAAGATAAGCTTgtgagcattttcctggcttgcattt---catgtgttactgttcttaatttcctagaactcacctcagcttttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342055|gb|BI967650.1|BI967650
EST:     ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
EST: gi|51337917|gb|CO981783.1|CO981783
EST:     ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTT                         GACATTTNNNTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT
genomic: ATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTgtgaggtttc ... attcttgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTT