1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGCACTGGATTTCCGAGAGGGAGTTCCAAGTATCGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAgtatgtgttattttcttatctttatttcttttttcttgaattttctatttgttgttgctattctaaatttttcttaattgtcatgactgagattaattcttatgattcattag
species | Glycine max |
transcript | GLYMA05G18170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAA GTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAGEST: gi|22525794|gb|BU084605.1|BU084605
genomic: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAgtatgtgtta ... gattcattagGTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAG
EST: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAA GTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAGEST: gi|208061559|gb|GD860141.1|GD860141
genomic: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAgtatgtgtta ... gattcattagGTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAG
EST: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAA GTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAG
genomic: CACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAgtatgtgtta ... gattcattagGTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCACTGGATTTCCGAGAGGGAGTTCCAAGTATCGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAgtatgtgttattttcttatctttatttcttttttcttgaattttctatttgttgttgctattctaaatttttcttaattgtcatgactgagattaattcttatgattcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG