Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGgtaagcttttatggttatggaagttatttgcttttaaccaatggctgaatttcttctgtatatttgtcgggtttttttttttttgctgtcagatttttgt...

Basic information

species Glycine max
transcript GLYMA05G08220.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08220.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 6
TCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGgtaagcttttatggttatggaagttatttgcttttaaccaatggctgaatttcttctgtatatttgtcgggtttttttttttttgctgtcagatttttgt---
 ||||||||||||||||||||||  | |||||||| || ||   ||||||||||||| | ||| |||| ||||||||||| ||||| || || || || ||||| |||| |     ||     || ||  || |  |  | |  |||  |   |  ||  |  || |    ||| |  |  ||   |     |  | |||   
GCATACATCATGGACAAAGATGGGGCTTTCAGGAATTCGTTCAGTGATGGTTGGGATCGAATATTGTCCAGGCATCCTATACCATTCTACTACTGTATAGgtaaactttcagaaacat---ttttcttgactatctattagtttctggctccgtgttgattggttttataatttgtcatgcttccataaattacatctgtcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600809|gb|BQ611140.1|BQ611140
EST:     TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCG                         GAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT
genomic: TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGgtaagctttt ... tgtatgtcagGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT
EST: gi|151412097|gb|EV281909.1|EV281909
EST:     TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCG                         GAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT
genomic: TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGgtaagctttt ... tgtatgtcagGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT
EST: gi|298193173|gb|HO033607.1|HO033607
EST:     TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCG                         GAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT
genomic: TTGGGATAGGATACTGTCAAGGCATCCTATTCCATTTTATTATTGCATCGgtaagctttt ... tgtatgtcagGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATT