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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt...

Basic information

species Glycine max
transcript GLYMA05G07020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 5'ss of exon 5
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatt-tttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt-
||  | |||||||| ||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||||     | || ||  | ||| |||  ||||| |  |  | |  |  |||| |     |   |    | |       ||| | | ||| |||| |  || 
GCCAGGCACAATGGCCAGAACTATGTTTTTGCTCTTCTCACTGGTTATCGTGATCCACCTGCTGGTGTTTCGgtaaccctctctc-atacatattgttttgttattttagtgttggtcgctacttgtaggtttcacatatgattctctgagtatctgatttgttagatt-tgta

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgcttattgctgtaactt-ttgcacat-tctaccaaagttgtcttatatgtcaattgctagactacgt
||  | |||||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||  |||||||  |  |    |  || || ||  |       ||   | ||  ||||  |     | ||  ||  | ||   ||| |   ||||    |  ||    
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatc-tcattctctgtcagttataccttaggcatttgcagttgctacttgctatgtgtatcgcccttaattcctttacaaa-caataaagatgctcttg

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T04 (Zea mays), 5'ss of exon 4
----------------------------GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattg-ttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctag-actacgt-
                            ||  | |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||||||||  ||||  ||  |||| |||| |   ||  |||  |  ||  | || | ||      ||    ||   |   |||  | || | | | ||| | ||| | ||| | 
GCTTACTGTTTGCATTGCATTCATCCAGGCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatc-tggtgtgttttacagt--tccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G032367_T01 (Zea mays), 5'ss of exon 5
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattg-ttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctag-actacgt-
||  | |||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||||||||  ||||  ||  |||| |||| |   ||  |||  |  ||  | || | ||      ||    ||   |   |||  | || | | | ||| | ||| | ||| | 
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATACCGTGATCCACCTGCTGGTGTTCAGgtactttacttgtgtatttattcttgcaatc-tggtgtgttttacagt--tccgtgatgttttcgctctagtattgttgtttataaatggttaggagtacctc

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G158479_T04 (Zea mays), 5'ss of exon 5
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgctt-attgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctaga--ctacgt---
||  | |||||||||||||||||||| || || ||||| ||||| |||| ||| || ||||||||||||  ||||  |  || | ||||    |||  |  |  | ||||| || |||  |  |  ||     || |  |  ||||| |||||      |    |||  || | |   
GCAAGGCACAATGGTCAGAACTATGTTTTCGCTCTTCTTACTGGATATCATGATCCACCTGCTGGTGTTCAGgtacctgtttatttattg---tttcaatctggtgtgctttatagctcca--tgatgtgttctccagtatcgttgt-ttataaaatggtcaagagaaacttcttccc

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27240.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatg--cttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt
|| |||||||||||||  |||||||| ||||| ||||| |||||||| ||||| || ||||||||  | ||||||| ||  | ||  ||  ||  || || |  |  |   | |  |   |   | |   | || | |  | |  |||                          
GCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGgtaagtttctctcattttccacattgaacttcttcgaattcaaagtgctggttatgaaaaatccgatgataactgtacag----------------------

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattcta---ccaaagttgtcttatatgtcaattgctagactacgt
|| ||||||||||| || || ||||| ||||| ||  | |||||||||||||| |||||||||||  ||||||||||||  | ||       ||||||  ||  ||  ||| ||  |  |||||       ||  |      || |  || | |     ||  | || |      
GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGgtaaatttctctcc-----tatttttgctt--tagacttgttattacaacttcaaattgttggaagttagaaataatcctgtg-actaacgggtacag-----

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgttgtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt-----
||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||||  |||||||||||| || |  | | |   | ||| || | ||| ||| |  ||| ||     || | |  |  ||  || |  || |  | ||   |  ||||  ||     
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgac----acagacttcat-aattttcttataaactttaacatcacgactttgtatttt

upper sequence: GLYMA05G07020.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 4
GCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgtt-gtctattaacatttttaattattatgcttattgctgtaacttttgcacattctaccaaagttgtcttatatgtcaattgctagactacgt
|| || |||||||||||||| ||||| ||||| ||| |||||||||| ||||| ||||| ||||||||||| |||| || ||  |||   |  || | |||  ||       |        |  |    | ||   |    |  || | ||| | ||| ||    ||  | ||
GCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAgtaagttctttatctcagattatatataaacatgtaatagaacatacctaggtactgaaatctgagtttatctgccatat-tttcagttatgtgatgatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285987|gb|BI469878.1|BI469878
EST:     ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
genomic: ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgtt ... aataatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
EST: gi|16343642|gb|BI969237.1|BI969237
EST:     ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
genomic: ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgtt ... aataatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
EST: gi|58018184|gb|CX704926.1|CX704926
EST:     ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
genomic: ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgtt ... aataatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
EST: gi|8670252|gb|BE191359.1|BE191359
EST:     ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTGTCG                         ATTAGAGAAGGACTGCACTATAATCCTTAATTTCCTGGCGGGGCTATTGCT
genomic: ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattgtt ... aataatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT