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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcgtgatttatcggaaattctttaccgttatctaagttgttctgatacattaggttggtttggtatcttgtttcag

Basic information

species Glycine max
transcript GLYMA05G05580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcgtgatttatcggaaattctttaccgttatctaagttgttctgatacattaggttggtttggtatcttgtttcag
 | |||||||| ||    || |||||||| || ||||  |||||||| ||||| || |||||||||||||| ||||| ||  |||||||||| |||| ||||||||| |  |   |      |  |  | || ||| ||   || || |   || | | |   | | | ||  |||    |||| ||  || || | ||||
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataaga-----tagtt--tcatatataggtgtttattgaagcttttgtgaagagattt-attgatt---ctggtctgccattttttctcag

upper sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcg---tgatttatcggaaattctttaccgttatcta-agttgttctga-tacatt-------aggttg-gtttggtatcttgtttcag
 | |||||||| |||  ||||||||||||||| || |  |||||||| || || || ||||||||||| ||||||||  ||  ||||||||| || | ||||||||| |  || | ||  |    | |   ||| ||    ||| |    ||| ||||| |  | ||||||| | || |||       |  |||  ||||  ||  | || |||
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac-ttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag

upper sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0236g00140.t01 (Vitis vinifera), 5'ss of exon 5
TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcg---tgatttatcggaaattctttaccgttatcta-agttgttctga-tacattaggttg--------gtttggtatcttgtttcag
 | |||||||| |||  ||||||||||||||| || |  |||||||| || || || ||||||||||| ||||||||  ||  ||||||||| || | ||||||||| |  || | ||  |    | |   ||| ||    ||| |    ||| ||||| |  | ||||||| | || |||    ||         ||||  ||  | || |||
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac-ttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398929|gb|EV268800.1|EV268800
EST:     ACCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|151409699|gb|EV279507.1|EV279507
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192316102|gb|FK007163.1|FK007163
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACATGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|17023266|gb|BM094300.1|BM094300
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|151410148|gb|EV279956.1|EV279956
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|6726203|gb|AW310557.1|AW310557
EST:     AAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: AAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192307027|gb|FK000005.1|FK000005
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCC
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCC
EST: gi|17023184|gb|BM094218.1|BM094218
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|213599163|gb|DB962242.1|DB962242
EST:     ATCTCTGAATGTTTTCCACCCAAATGCAACATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTAT
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTAT
EST: gi|213620263|gb|DB961408.1|DB961408
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
EST: gi|192303847|gb|FG998199.1|FG998199
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTT
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTT
EST: gi|192316103|gb|FK007164.1|FK007164
EST:     ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACATGATAGCTT                         TTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG
genomic: ATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaa ... cttgtttcagTTTCATTTAGGCTCTATGATTTGCACAATACTGGCTTTATAGAGCGCCCTG