Sequence
atgc intronic sequence ATGC exonic sequenceTTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTCTGGAGAAACTGAGCTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGgtaatcatatgcctgttttaatactattatatgattgtattatcagagtatttcctttcctttcagtttatcacagtcctgtgtgtgcttcag
Basic information
species | Glycine max |
transcript | GLYMA05G04600.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04600.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g01640.1 (Oryza sativa), 5'ss of exon 5
TTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTCTGGAGAAACTGAGCTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGgtaatcatatgcctgttttaatactattatatgattgta--ttatcagagtatttcctttcctttcagtttatcacagtcctgtgtgtgcttcag
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TTTTTGAATTTGACTTTTGGAAACGGCCAGATAGTCATCGTGAGGCCAATATCAAGATACGAACAACACGAGATGGATATGTTCATGCTATTATTTCATGgtagt-gca-gcctcttgaagaatctctagtcttctgaaatttctctgaataaatgcatttatctgtgactgcag--------------------
upper sequence: GLYMA05G04600.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G16570.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTCTGGAGAAACTGAGCTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGgta----atcatatgcctgttttaatactattatat--gattgtattatcagagtatttcctttcctttcagt--ttatcacagtcctgtgtgtgcttcag
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TATTTGAATTTGACTTTTGGAAACGGCCAGAAAGTAATGGAGAGCTTGATGTGCACATAGAAGCAAAAACCACGGGTAGTGTTCATGCTATTATATCATGgtactgtatcctttactggctttcttcttttcgtttttaggtgtttgaactgcatatatcttcacatattagtagttagtactctacaacgaaaaagtac-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207794981|gb|GD767700.1|GD767700EST: CTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTG GTGGGTACTTCAACTTGATCGTGAAGGGACCAT
genomic: CTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGgtaatcatat ... tgtgcttcagGTGGGTACTTCAACTTGATCGTGAAGGGACCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTCTGGAGAAACTGAGCTGTGTGTAAAGGCAACTAATGATGGGAGAATTCATGCTGTGGTCTCTTGgtaatcatatgcctgttttaatactattatatgattgtattatcagagtatttcctttcctttcagtttatcacagtcctgtgtgtgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG