Sequence
atgc intronic sequence ATGC exonic sequenceGCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag
Basic information
species | Glycine max |
transcript | GLYMA05G04150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g03910.1 (Oryza sativa), 5'ss of exon 4
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctc-atccactacttatttttgtt-ttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtc-tgacatttttatttgtctttcctagtgatgtaactgttttaaattacata-atttttcttgtatttatgacta-tgatag
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GTTAGAGTTCCTGTTGGAAAATTTATATTGGAACTACCTGCTGGGATGCTAGACGATGAAAAGGGAGATTTTGTTGGCACTGCAGTCCGTGAGgttagtatccctgtttttctttatctagaggtatgtgctgttgttggagattagtaatgctagcactcgtccggtctttgccagtttggttcacagaccatagtaatactgtatataacattgagtcagaagttcaccatatttgaagtatagtgataaagggtctttcattactgacag
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G337631_T01 (Zea mays), 5'ss of exon 6
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag
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GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTCCCTGCTGGGATGCTAGATGATGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttggcttctga-atacatcatgcaccgaaatttgtgtactaa----tgcaggatagtca-gctcgacaattttcttttggtgtattttgaatgtttg---------------------------------------------------------------------
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G069008_T02 (Zea mays), 5'ss of exon 4
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccct-----ctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag
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GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAGATGACGAAAAAGGTGATTTTGTTGGCACCGCAGTCCGTGAGgttagtatcttggcttctgaatacgcatgcaccgaa-atttgtgttctaatgcaggatag--ccagcattgtatttatcctg-tttttgccagattttggtcca----------------------------------------------------------------------------
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G11980.1 (Arabidopsis thaliana), 5'ss of exon 5
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag
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GTTCGGGTTCCTACTGGGAAGATTGTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCAGTTCGCGAGgt--acttgacaa-ctttgtgaaagaatttgaatgtttaagatga-acatag---tatagaagttgttgagtttaaa---tactgtgactgcaaatgaaatggcctgcaa-----------------------------------------------------------------
upper sequence: GLYMA05G04150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g04840.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctcatcc----actacttatttttgttttgatacatagctgtactgaaag---tgcat----gttttatggcctttttcacttgtatgtctgacatttttatttgtctttcct-----agtgatgtaactgttttaaattacataatttttc---ttgtat-ttatgactatgatag
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GTTAGGGTCCCTGTTGGGAAGCGTATCTTGGAATTGCCAGCTGGAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctctctacaagcataaatgtagaaatttttatcttcactgccacatataaatctgcctgcagctttgcatcattattgtacagaatttgaaaccatggtttatttttattgtgtttgttctttttgggggagttaggttaggaccccaagttcagaacgttttcaaactttatcttttgagtatgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192321665|gb|FK014009.1|FK014009EST: GAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAG GTTGAAGAAGAGATTGGTATGAAGTTAAATGTAGGAGACATGGTTGACCTC
genomic: GAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttct ... actatgatagGTTGAAGAAGAGATTGGTATGAAGTTAAATGTAGGAGACATGGTTGACCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGGGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAAGGTGATTTTGTTGGTACTGCAGTTCGTGAGgtctatttctctctccctctcatccactacttatttttgttttgatacatagctgtactgaaagtgcatgttttatggcctttttcacttgtatgtctgacatttttatttgtctttcctagtgatgtaactgttttaaattacataatttttcttgtatttatgactatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG